RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SLC7A5Q01650 507 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 AUHQ13825 339 aaKnown RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 RAB33AQ14088 237 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 DDR2Q16832 855 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 CCDC178Q5BJE1 867 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 DNAJC21Q5F1R6 531 aaKnown RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 ACBD5Q5T8D3 534 aaPredicted RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 ANKRD18AQ8IVF6 992 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 FAM178BQ8IXR5 827 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 CKAP2LQ8IYA6 745 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 DNAAF4Q8WXU2 420 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 CDK5RAP3Q96JB5 506 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 DHRS1Q96LJ7 313 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 PLEKHG4BQ96PX9 1271 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 HAUS7Q99871 368 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 LGR4Q9BXB1 951 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 MAK16Q9BXY0 300 aaKnown RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 DUSP15Q9H1R2 295 aaPredicted RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 RSPH9Q9H1X1 276 aaPredicted RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 RMI1Q9H9A7 625 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 ATP13A1Q9HD20 1204 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 INCENPQ9NQS7 918 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 SEMA3GQ9NS98 782 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 GNL3LQ9NVN8 582 aaKnown RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 GFOD1Q9NXC2 390 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.33□□□□□ -1.4
CD44-236ENST00000533222 POLKQ9UBT6 870 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 SUSD2Q9UGT4 822 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 ATP8A1Q9Y2Q0 1164 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 ZNF451Q9Y4E5 1061 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 SLC12A7Q9Y666 1083 aa6.33□□□□□ -1.4
CD44-236ENST00000533222 TNIKQ9UKE5 1360 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 ANKRD62A6NC57 917 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 KIAA1324LA8MWY0 1029 aaPredicted RBP6.32□□□□□ -1.4
CD44-236ENST00000533222 MEIS1O00470 390 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 CAND2O75155 1236 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 E2F6O75461 281 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 DDAH1O94760 285 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 EPHX1P07099 455 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 MYBL2P10244 700 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 KCNA2P16389 499 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 PAX3P23760 479 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 GRIK1P39086 918 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 MRPL12P52815 198 aaKnown RBP6.32□□□□□ -1.4
CD44-236ENST00000533222 KRT72Q14CN4 511 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 TBC1D25Q3MII6 688 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 CCDC80Q76M96 950 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 LRRC49Q8IUZ0 686 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 C7orf61Q8IZ16 206 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 FAM76AQ8TAV0 307 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 COX4I2Q96KJ9 171 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 FGD4Q96M96 766 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 THUMPD2Q9BTF0 503 aaKnown RBP6.32□□□□□ -1.4
CD44-236ENST00000533222 RWDD1Q9H446 243 aaPredicted RBP6.32□□□□□ -1.4
CD44-236ENST00000533222 ZSWIM5Q9P217 1185 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.32□□□□□ -1.4
CD44-236ENST00000533222 CTTNBP2Q8WZ74 1663 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 MYOM3Q5VTT5 1437 aa6.32□□□□□ -1.4
CD44-236ENST00000533222 EIF3AQ14152 1382 aaKnown RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 POLA1P09884 1462 aaPredicted RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 NCOA2Q15596 1464 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 SNUPNO95149 360 aaKnown RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 PRAMEF1O95521 474 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 SRFP11831 508 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 PECAM1P16284 738 aaPredicted RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 GCFC2P16383 781 aaKnown RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 CLCN7P51798 805 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 TPM4P67936 248 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 DDR1Q08345 913 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 RBL2Q08999 1139 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 NMIQ13287 307 aaPredicted RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 SERINC3Q13530 473 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 POSTNQ15063 836 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 ZRSR1Q15695 479 aaKnown RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 AOC3Q16853 763 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 INTS5Q6P9B9 1019 aaKnown RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 C16orf87Q6PH81 154 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 SPRED2Q7Z698 418 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 PCGF5Q86SE9 256 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 DTX1Q86Y01 620 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 ADCY4Q8NFM4 1077 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 FBXO18Q8NFZ0 1043 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 KIF18AQ8NI77 898 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 PIWIL2Q8TC59 973 aaKnown RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 BCL7CQ8WUZ0 217 aaPredicted RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 GIMAP1Q8WWP7 306 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 BRF1Q92994 677 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 UBE2FQ969M7 185 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 ARMC5Q96C12 935 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 HDAC8Q9BY41 377 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 TRIM55Q9BYV6 548 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 TRIM6Q9C030 488 aaPredicted RBP6.31□□□□□ -1.4
CD44-236ENST00000533222 KLHL25Q9H0H3 589 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 UNC45AQ9H3U1 944 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 NRDE2Q9H7Z3 1164 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 GP6Q9HCN6 339 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 IRAK4Q9NWZ3 460 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 APEX2Q9UBZ4 518 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 FBXL21Q9UKT6 434 aa6.31□□□□□ -1.4
CD44-236ENST00000533222 KCNH3Q9ULD8 1083 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms