RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GCOM1H8Y6P7 765 aaPredicted RBP12.33□□□□□ -0.44
CD44-227ENST00000528086 PIK3CDO00329 1044 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 B4GALT4O60513 344 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 EIF3JO75822 258 aaKnown RBP12.33□□□□□ -0.44
CD44-227ENST00000528086 POLR2MP0CAP2 368 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 KIF5BP33176 963 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 APOBRQ0VD83 1088 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 HIC1Q14526 733 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 PPP2R5BQ15173 497 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 STXBP2Q15833 593 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 RNF20Q5VTR2 975 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 ARHGEF16Q5VV41 709 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 FBXL16Q8N461 479 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 JAKMIP1Q96N16 626 aaKnown RBP12.33□□□□□ -0.44
CD44-227ENST00000528086 SPC25Q9HBM1 224 aa12.33□□□□□ -0.44
CD44-227ENST00000528086 MAP3K20Q9NYL2 800 aaKnown RBP12.33□□□□□ -0.44
CD44-227ENST00000528086 KLF18A0A0U1RQI7 1052 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 NKRFO15226 690 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-227ENST00000528086 TIMP1P01033 207 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 NEFLP07196 543 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 MMP3P08254 477 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 MYCLP12524 364 aaPredicted RBP12.32□□□□□ -0.44
CD44-227ENST00000528086 HOXD8P13378 290 aaPredicted RBP12.32□□□□□ -0.44
CD44-227ENST00000528086 RPS6KB1P23443 525 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 ADD1P35611 737 aaKnown RBP12.32□□□□□ -0.44
CD44-227ENST00000528086 TTLL4Q14679 1199 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 ERICH6BQ5W0A0 696 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 WWC2Q6AWC2 1192 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 Q6ZUG5 572 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 SAMD3Q8N6K7 520 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 RRP36Q96EU6 259 aaKnown RBP12.32□□□□□ -0.44
CD44-227ENST00000528086 LZTS2Q9BRK4 669 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 TRMT13Q9NUP7 481 aaKnown RBP12.32□□□□□ -0.44
CD44-227ENST00000528086 TMEM39AQ9NV64 488 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 CHD9Q3L8U1 2897 aa12.32□□□□□ -0.44
CD44-227ENST00000528086 NID2Q14112 1375 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 EYSQ5T1H1 3165 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 DCDC2CA8MYV0 355 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 ZBTB43O43298 467 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 SORBS3O60504 671 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 CABYRO75952 493 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 MYL3P08590 195 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 CALM1P0DP23 149 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 CALM2P0DP24 149 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 CALM3P0DP25 149 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 CYP2C18P33260 490 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 GNAQP50148 359 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 EVCP57679 992 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 TOB2Q14106 344 aaPredicted RBP12.31□□□□□ -0.44
CD44-227ENST00000528086 KRT32Q14532 448 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 NTRK3Q16288 839 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 PKN1Q16512 942 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 UBE2SQ16763 222 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 NBPF20Q3BBV1 942 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 MYSM1Q5VVJ2 828 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 EMID1Q96A84 441 aaPredicted RBP12.31□□□□□ -0.44
CD44-227ENST00000528086 VTI1AQ96AJ9 217 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 INPP4AQ96PE3 977 aaPredicted RBP12.31□□□□□ -0.44
CD44-227ENST00000528086 NOC4LQ9BVI4 516 aaKnown RBP12.31□□□□□ -0.44
CD44-227ENST00000528086 WNT8AQ9H1J5 351 aa12.31□□□□□ -0.44
CD44-227ENST00000528086 ALDH8A1Q9H2A2 487 aaPredicted RBP12.31□□□□□ -0.44
CD44-227ENST00000528086 STXBP3O00186 592 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 GH1P01241 217 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 UBA1P22314 1058 aaKnown RBP12.3□□□□□ -0.44
CD44-227ENST00000528086 GPNMBQ14956 572 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 RTN1Q16799 776 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 HSDL1Q3SXM5 330 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 CELF3Q5SZQ8 465 aaKnown RBP12.3□□□□□ -0.44
CD44-227ENST00000528086 FAM109BQ6ICB4 259 aaPredicted RBP12.3□□□□□ -0.44
CD44-227ENST00000528086 Q7L0L9 218 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 BRF1Q92994 677 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 LBHD1Q9BQE6 289 aaPredicted RBP12.3□□□□□ -0.44
CD44-227ENST00000528086 MTG1Q9BT17 334 aaPredicted RBP12.3□□□□□ -0.44
CD44-227ENST00000528086 PPP1R12CQ9BZL4 782 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 ZSWIM6Q9HCJ5 1215 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 RTEL1Q9NZ71 1219 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 CHD7Q9P2D1 2997 aa12.3□□□□□ -0.44
CD44-227ENST00000528086 V9GY48 417 aaPredicted RBP12.3□□□□□ -0.44
CD44-227ENST00000528086 GBF1Q92538 1859 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 PTPRSQ13332 1948 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 GOLGA8AA7E2F4 631 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 GOLGA8BA8MQT2 603 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 SPATA31C2B4DYI2 1134 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 HAS3O00219 553 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 EDIL3O43854 480 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 PPFIA3O75145 1194 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 SEC24BO95487 1268 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 CYP2C9P11712 490 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 CSF2RAP15509 400 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 RAG1P15918 1043 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 ICAM3P32942 547 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 CPT1AP50416 773 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 TMEM240Q5SV17 173 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 RASIP1Q5U651 963 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 MFSD5Q6N075 450 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 BLOC1S2Q6QNY1 142 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 DHX38Q92620 1227 aaKnown RBP12.29□□□□□ -0.44
CD44-227ENST00000528086 WNT8BQ93098 351 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.29□□□□□ -0.44
CD44-227ENST00000528086 LARP6Q9BRS8 491 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms