RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 NOP56O00567 594 aaKnown RBP6.18□□□□□ -1.42
USP48-211ENST00000526044 CD3EP07766 207 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 HSPA2P54652 639 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 GRB10Q13322 594 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 NBPF8Q3BBV2 869 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 POMZP3Q6PJE2 187 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 CEP128Q6ZU80 1094 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 CKAP2LQ8IYA6 745 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 CRACR2BQ8N4Y2 399 aaPredicted RBP6.18□□□□□ -1.42
USP48-211ENST00000526044 BVESQ8NE79 360 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 HHIPL1Q96JK4 782 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 ERVK13-1Q9NX77 482 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 APEX2Q9UBZ4 518 aa6.18□□□□□ -1.42
USP48-211ENST00000526044 ZFYVE9O95405 1425 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 IFT172Q9UG01 1749 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 NEXMIFQ5QGS0 1516 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 ZNF503-AS2A6NEH8 195 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 KRTAP9-7A8MTY7 169 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 FADS2P1A8MWK0 482 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 NRDCO43847 1150 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 VAMP4O75379 141 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 USP2O75604 605 aaPredicted RBP6.17□□□□□ -1.42
USP48-211ENST00000526044 GJB6O95452 261 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 TSPAN15O95858 294 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 CFPP27918 469 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 RTP1P59025 263 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 AMPD2Q01433 879 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 RAB33AQ14088 237 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 LRRC56Q8IYG6 542 aaPredicted RBP6.17□□□□□ -1.42
USP48-211ENST00000526044 CELF2-AS1Q8N7Q2 184 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 NAT16Q8N8M0 369 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 PPP1R14AQ96A00 147 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 C14orf93Q9H972 538 aaKnown RBP6.17□□□□□ -1.42
USP48-211ENST00000526044 CWC22Q9HCG8 908 aaKnown RBP6.17□□□□□ -1.42
USP48-211ENST00000526044 ST7Q9NRC1 585 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 GPR160Q9UJ42 338 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 EMC9Q9Y3B6 208 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 NCANO14594 1321 aa6.17□□□□□ -1.42
USP48-211ENST00000526044 ZNF142P52746 1687 aaPredicted RBP6.17□□□□□ -1.42
USP48-211ENST00000526044 SLIT1O75093 1534 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 A0A1W2PQ45 241 aaPredicted RBP6.16□□□□□ -1.42
USP48-211ENST00000526044 A0A1W2PQY0 241 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 WTIPA6NIX2 430 aaPredicted RBP6.16□□□□□ -1.42
USP48-211ENST00000526044 NOTOA8MTQ0 251 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 AURKAO14965 403 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 SUSD5O60279 629 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 PSPNO60542 156 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 IFNGR1P15260 489 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 GTF2F1P35269 517 aaKnown RBP eCLIP6.16□□□□□ -1.42
USP48-211ENST00000526044 DDR2Q16832 855 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 DPY19L1Q2PZI1 675 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 SV2CQ496J9 727 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 TIGD5Q53EQ6 642 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 HLA-DQA1Q5Y7H0 255 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 MPZL3Q6UWV2 235 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 EEPD1Q7L9B9 569 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 TMEM52Q8NDY8 209 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 ARMC5Q96C12 935 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 HIRIP3Q9BW71 556 aaPredicted RBP6.16□□□□□ -1.42
USP48-211ENST00000526044 TRIM55Q9BYV6 548 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 RNF32Q9H0A6 362 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 TBX22Q9Y458 520 aa6.16□□□□□ -1.42
USP48-211ENST00000526044 ARHGAP23Q9P227 1491 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 FGF10O15520 208 aaPredicted RBP6.15□□□□□ -1.42
USP48-211ENST00000526044 KCNH1O95259 989 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 TBC1D8O95759 1140 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 ZSCAN22P10073 491 aaPredicted RBP6.15□□□□□ -1.42
USP48-211ENST00000526044 SF3A1Q15459 793 aaKnown RBP6.15□□□□□ -1.42
USP48-211ENST00000526044 LCE5AQ5TCM9 118 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 EEF1DP3Q658K8 133 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 TMEM132EQ6IEE7 984 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 MRM1Q6IN84 353 aaKnown RBP6.15□□□□□ -1.42
USP48-211ENST00000526044 RCSD1Q6JBY9 416 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 GALNT18Q6P9A2 607 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 CYP2R1Q6VVX0 501 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 LIN37Q96GY3 246 aaPredicted RBP6.15□□□□□ -1.42
USP48-211ENST00000526044 SLC26A8Q96RN1 970 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 MCMBPQ9BTE3 642 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 EPN3Q9H201 632 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 LRP2BPQ9P2M1 347 aa6.15□□□□□ -1.42
USP48-211ENST00000526044 GPR55Q9Y2T6 319 aaPredicted RBP6.15□□□□□ -1.42
USP48-211ENST00000526044 PLEKHG1Q9ULL1 1385 aa6.15□□□□□ -1.43
USP48-211ENST00000526044 PRAG1Q86YV5 1406 aa6.15□□□□□ -1.43
USP48-211ENST00000526044 MYOM2P54296 1465 aa6.15□□□□□ -1.43
USP48-211ENST00000526044 LMTK3Q96Q04 1460 aa6.15□□□□□ -1.43
USP48-211ENST00000526044 SCAF11Q99590 1463 aaKnown RBP6.15□□□□□ -1.43
USP48-211ENST00000526044 C2orf71A6NGG8 1288 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.14□□□□□ -1.43
USP48-211ENST00000526044 STXBP3O00186 592 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 U2SURPO15042 1029 aaKnown RBP6.14□□□□□ -1.43
USP48-211ENST00000526044 SEPHS1P49903 392 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 NBPF6Q5VWK0 638 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 SYDE1Q6ZW31 735 aaPredicted RBP6.14□□□□□ -1.43
USP48-211ENST00000526044 SLCO6A1Q86UG4 719 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 NLRX1Q86UT6 975 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 TRIM59Q8IWR1 403 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 SHISA4Q96DD7 197 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 MRGPRX3Q96LB0 322 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 NBPF4Q96M43 638 aa6.14□□□□□ -1.43
USP48-211ENST00000526044 PTCHD1Q96NR3 888 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms