RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 SLC35F1Q5T1Q4 408 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 DUSP27Q5VZP5 1158 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 SYT9Q86SS6 491 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 GRAMD1CQ8IYS0 662 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 CNPY4Q8N129 248 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 MIER2Q8N344 545 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 CAMKK1Q8N5S9 505 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 ZNF507Q8TCN5 953 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 ERP27Q96DN0 273 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 ACO2Q99798 780 aaKnown RBP6.56□□□□□ -1.36
USP47-204ENST00000525078 HCN2Q9UL51 889 aa6.56□□□□□ -1.36
USP47-204ENST00000525078 GPR55Q9Y2T6 319 aaPredicted RBP6.56□□□□□ -1.36
USP47-204ENST00000525078 FANCGO15287 622 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 H2AFYO75367 372 aaKnown RBP6.55□□□□□ -1.36
USP47-204ENST00000525078 ZRANB2O95218 330 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP47-204ENST00000525078 GRK2P25098 689 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 UBAP2LQ14157 1087 aaKnown RBP6.55□□□□□ -1.36
USP47-204ENST00000525078 HP1BP3Q5SSJ5 553 aaPredicted RBP6.55□□□□□ -1.36
USP47-204ENST00000525078 ZBTB37Q5TC79 503 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 TXNDC11Q6PKC3 985 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 CDC37L1Q7L3B6 337 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 CYB5D2Q8WUJ1 264 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 MAP3K14Q99558 947 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 PHF20Q9BVI0 1012 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 USP26Q9BXU7 913 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 NDFIP2Q9NV92 336 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 H2AFY2Q9P0M6 372 aaPredicted RBP6.55□□□□□ -1.36
USP47-204ENST00000525078 ASAP1Q9ULH1 1129 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 SLC6A14Q9UN76 642 aa6.55□□□□□ -1.36
USP47-204ENST00000525078 DIS3Q9Y2L1 958 aaKnown RBP6.55□□□□□ -1.36
USP47-204ENST00000525078 NOC2LQ9Y3T9 749 aaKnown RBP6.55□□□□□ -1.36
USP47-204ENST00000525078 LRRC10BA6NIK2 292 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 SCG5P05408 212 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 HSD3B1P14060 373 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 FGFR3P22607 806 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 GRK6P43250 576 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 ZNF445P59923 1031 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 FAM193AP78312 1265 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 PIP4K2BP78356 416 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 GPSM2P81274 684 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 AMPD2Q01433 879 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 SUZ12Q15022 739 aaKnown RBP6.54□□□□□ -1.36
USP47-204ENST00000525078 NBPF9Q3BBW0 867 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 TUBB8Q3ZCM7 444 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 NBPF12Q5TAG4 269 aaPredicted RBP6.54□□□□□ -1.36
USP47-204ENST00000525078 CC2D1AQ6P1N0 951 aaPredicted RBP6.54□□□□□ -1.36
USP47-204ENST00000525078 TTLL7Q6ZT98 887 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 SLC41A1Q8IVJ1 513 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 PPIL6Q8IXY8 311 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 CMIPQ8IY22 773 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 DEPTORQ8TB45 409 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 SNRNP27Q8WVK2 155 aaKnown RBP6.54□□□□□ -1.36
USP47-204ENST00000525078 C1orf159Q96HA4 380 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 ZDHHC15Q96MV8 337 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 ALG1Q9BT22 464 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 APOL5Q9BWW9 433 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 RSAD1Q9HA92 442 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 RAD18Q9NS91 495 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 OXSMQ9NWU1 459 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 RTEL1Q9NZ71 1219 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 CLIC5Q9NZA1 410 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 PGAP2Q9UHJ9 254 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 ATXN7L1Q9ULK2 861 aaPredicted RBP6.54□□□□□ -1.36
USP47-204ENST00000525078 PCDHB12Q9Y5F1 795 aa6.54□□□□□ -1.36
USP47-204ENST00000525078 ARVCFO00192 962 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 SHOXO15266 292 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 TLR5O60602 858 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 SNX2O60749 519 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 VAMP4O75379 141 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 HRGP04196 525 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 CTSBP07858 339 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 TM4SF4P48230 202 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 DNM2P50570 870 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 GPR85P60893 370 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 ERVK-24P63145 666 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 RNF4P78317 190 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 RING1Q06587 406 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 DPY19L1Q2PZI1 675 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.53□□□□□ -1.36
USP47-204ENST00000525078 FAM47CQ5HY64 1035 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 DACT2Q5SW24 774 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 FAM182BQ5T319 152 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 DARS2Q6PI48 645 aaKnown RBP6.53□□□□□ -1.36
USP47-204ENST00000525078 SAPCD2Q86UD0 394 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 FIBCD1Q8N539 461 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 MYCT1Q8N699 235 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 IL22RA1Q8N6P7 574 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 C2orf69Q8N8R5 385 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 XAGE3Q8WTP9 111 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 ZFYVE21Q9BQ24 234 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 CELF4Q9BZC1 486 aaKnown RBP6.53□□□□□ -1.36
USP47-204ENST00000525078 MYLK2Q9H1R3 596 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 VPS11Q9H270 941 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 PRDM6Q9NQX0 595 aa6.53□□□□□ -1.36
USP47-204ENST00000525078 SENP3-EIF4A1A0A087X0R7 540 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 hCG_1984214I3L0E3 225 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 J3KRW8 73 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 LINC01387J3KSC0 135 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 DDX3YO15523 660 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 KRT37O76014 449 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms