RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ACRBPQ8NEB7 543 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 HAS1Q92839 578 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 MBOAT7Q96N66 472 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 TTYH3Q9C0H2 523 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 SEMA6BQ9H3T3 888 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 SLC39A2Q9NP94 309 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 FAM198AQ9UFP1 575 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 PCDHA1Q9Y5I3 950 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 SIPA1L1O43166 1804 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 POTEMA6NI47 508 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 TBX3O15119 743 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 ARHGAP25P42331 645 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 RBM5P52756 815 aaKnown RBP eCLIP16.54■□□□□ 0.24
NUP54-217ENST00000514987 EHHADHQ08426 723 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 MAN2A1Q16706 1144 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 MIIPQ5JXC2 388 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 KIAA0825Q8IV33 1275 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 DDX12PQ92771 950 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 SLF1Q9BQI6 1058 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 DNAJC18Q9H819 358 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 MYH7BA7E2Y1 1941 aa16.54■□□□□ 0.24
NUP54-217ENST00000514987 EIF3CLB5ME19 914 aaKnown RBP16.53■□□□□ 0.24
NUP54-217ENST00000514987 TUBBP07437 444 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 CHMP4BP1P59074 171 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 ICA1Q05084 483 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 CDC37Q16543 378 aaPredicted RBP16.53■□□□□ 0.24
NUP54-217ENST00000514987 ABCB5Q2M3G0 1257 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 GRIPAP1Q4V328 841 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 VWA3BQ502W6 1294 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 ZFPM1Q8IX07 1006 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 CCDC65Q8IXS2 484 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 MYOCDQ8IZQ8 938 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 SLC35F6Q8N357 371 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 PCMTD1Q96MG8 357 aaPredicted RBP16.53■□□□□ 0.24
NUP54-217ENST00000514987 EIF3CQ99613 913 aaKnown RBP16.53■□□□□ 0.24
NUP54-217ENST00000514987 CHP1Q99653 195 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 AMNQ9BXJ7 453 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 IRX2Q9BZI1 471 aaPredicted RBP16.53■□□□□ 0.24
NUP54-217ENST00000514987 EDEM3Q9BZQ6 932 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 ATRNL1Q5VV63 1379 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 ZNF646O15015 1829 aaPredicted RBP16.53■□□□□ 0.24
NUP54-217ENST00000514987 ARFGEF1Q9Y6D6 1849 aa16.53■□□□□ 0.24
NUP54-217ENST00000514987 DDTLA6NHG4 134 aaPredicted RBP16.52■□□□□ 0.24
NUP54-217ENST00000514987 IDEP14735 1019 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 HNRNPH3P31942 346 aaKnown RBP16.52■□□□□ 0.24
NUP54-217ENST00000514987 FAM193AP78312 1265 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 TEX35Q5T0J7 233 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 UTP14CQ5TAP6 766 aaKnown RBP16.52■□□□□ 0.24
NUP54-217ENST00000514987 ZNF772Q68DY9 489 aaPredicted RBP16.52■□□□□ 0.24
NUP54-217ENST00000514987 WDR59Q6PJI9 974 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 DYMQ7RTS9 669 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 ANO3Q9BYT9 981 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 KCNMB3Q9NPA1 279 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 ZNF446Q9NWS9 450 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 RGPD3A6NKT7 1758 aaPredicted RBP16.52■□□□□ 0.24
NUP54-217ENST00000514987 RGPD4Q7Z3J3 1758 aa16.52■□□□□ 0.24
NUP54-217ENST00000514987 KRT86O43790 486 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 ZRANB2O95218 330 aaKnown RBP eCLIP16.51■□□□□ 0.23
NUP54-217ENST00000514987 GNA14O95837 355 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 TCP10Q12799 353 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 BRD3Q15059 726 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 HAUS3Q68CZ6 603 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 KCTD17Q8N5Z5 321 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 CEP63Q96MT8 703 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 NDST4Q9H3R1 872 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 PSMD14O00487 310 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 MMP14P50281 582 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 RBM26Q5T8P6 1007 aaKnown RBP16.51■□□□□ 0.23
NUP54-217ENST00000514987 BTNL9Q6UXG8 535 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 KIAA1328Q86T90 577 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 FBXO11Q86XK2 927 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 DNAJC19Q96DA6 116 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 TSGA10Q9BZW7 698 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 PANK4Q9NVE7 773 aa16.51■□□□□ 0.23
NUP54-217ENST00000514987 PITPNM2Q9BZ72 1349 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 F5H6K3 240 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 FKBP3Q00688 224 aaKnown RBP16.5■□□□□ 0.23
NUP54-217ENST00000514987 KLRC3Q07444 240 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 COASYQ13057 564 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 Q4G0T1 1027 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 FAM26FQ5R3K3 315 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 SYDE2Q5VT97 1194 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 SH3BP5LQ7L8J4 393 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 KCNK18Q7Z418 384 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 TXLNBQ8N3L3 684 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 FAM20AQ96MK3 541 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 NUDT12Q9BQG2 462 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 ARFGAP3Q9NP61 516 aa16.5■□□□□ 0.23
NUP54-217ENST00000514987 HERC5Q9UII4 1024 aaKnown RBP16.5■□□□□ 0.23
NUP54-217ENST00000514987 REXO2Q9Y3B8 237 aaKnown RBP16.5■□□□□ 0.23
NUP54-217ENST00000514987 SLX4Q8IY92 1834 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 CCDC151A5D8V7 595 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 RASSF10A6NK89 507 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 RAD21O60216 631 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 PLA2G4BP0C869 781 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 PNMA6AP0CW24 399 aaPredicted RBP16.49■□□□□ 0.23
NUP54-217ENST00000514987 ZSCAN20P17040 1043 aaPredicted RBP16.49■□□□□ 0.23
NUP54-217ENST00000514987 DMTNQ08495 405 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 SIAH1Q8IUQ4 282 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms