RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 MIGA1Q8NAN2 632 aa11.35□□□□□ -0.59
CLCN3-208ENST00000512813 PRPF38AQ8NAV1 312 aaKnown RBP11.35□□□□□ -0.59
CLCN3-208ENST00000512813 OR6J1Q8NGC5 347 aa11.35□□□□□ -0.59
CLCN3-208ENST00000512813 MORC4Q8TE76 937 aa11.35□□□□□ -0.59
CLCN3-208ENST00000512813 CLP1Q92989 425 aaKnown RBP11.35□□□□□ -0.59
CLCN3-208ENST00000512813 RAVER2Q9HCJ3 691 aaKnown RBP11.35□□□□□ -0.59
CLCN3-208ENST00000512813 A1CFQ9NQ94 594 aaKnown RBP11.35□□□□□ -0.59
CLCN3-208ENST00000512813 ANGPTL2Q9UKU9 493 aa11.35□□□□□ -0.59
CLCN3-208ENST00000512813 NR2E1Q9Y466 385 aa11.35□□□□□ -0.59
CLCN3-208ENST00000512813 A6NJR5 290 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 RBAK-RBAKDNI3L0D1 243 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 ZBED4O75132 1171 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 UPP2O95045 317 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 CYP2E1P05181 493 aaPredicted RBP11.34□□□□□ -0.59
CLCN3-208ENST00000512813 EEF2P13639 858 aaKnown RBP11.34□□□□□ -0.59
CLCN3-208ENST00000512813 NPR3P17342 541 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 SP100P23497 879 aaPredicted RBP11.34□□□□□ -0.59
CLCN3-208ENST00000512813 TRIM71Q2Q1W2 868 aaKnown RBP11.34□□□□□ -0.59
CLCN3-208ENST00000512813 PLEKHG4Q58EX7 1191 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 PPM1JQ5JR12 505 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 ZNF618Q5T7W0 954 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 PLVAPQ9BX97 442 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 IFIH1Q9BYX4 1025 aaKnown RBP11.34□□□□□ -0.59
CLCN3-208ENST00000512813 WDR11Q9BZH6 1224 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 ACAD9Q9H845 621 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 SLC38A10Q9HBR0 1119 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 SNRKQ9NRH2 765 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 SWAP70Q9UH65 585 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 COG6Q9Y2V7 657 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.34□□□□□ -0.59
CLCN3-208ENST00000512813 LCTP09848 1927 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 MYO10Q9HD67 2058 aa11.34□□□□□ -0.59
CLCN3-208ENST00000512813 ITPR1Q14643 2758 aa11.33□□□□□ -0.59
CLCN3-208ENST00000512813 NBEAQ8NFP9 2946 aa11.33□□□□□ -0.6
CLCN3-208ENST00000512813 DSPP15924 2871 aaKnown RBP11.33□□□□□ -0.6
CLCN3-208ENST00000512813 ATP8B4Q8TF62 1192 aa11.33□□□□□ -0.6
CLCN3-208ENST00000512813 IL17RAQ96F46 866 aa11.33□□□□□ -0.6
CLCN3-208ENST00000512813 NUP88Q99567 741 aaPredicted RBP11.33□□□□□ -0.6
CLCN3-208ENST00000512813 HOMER2Q9NSB8 354 aa11.33□□□□□ -0.6
CLCN3-208ENST00000512813 PLAGL2Q9UPG8 496 aa11.33□□□□□ -0.6
CLCN3-208ENST00000512813 CTDP1Q9Y5B0 961 aaPredicted RBP11.33□□□□□ -0.6
CLCN3-208ENST00000512813 ADGRA3Q8IWK6 1321 aa11.33□□□□□ -0.6
CLCN3-208ENST00000512813 RBM47A0AV96 593 aaKnown RBP11.32□□□□□ -0.6
CLCN3-208ENST00000512813 FSD2A1L4K1 749 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 E9PSI1 815 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 RAD21O60216 631 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 PROS1P07225 676 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 DNAJB1P25685 340 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 PTK7Q13308 1070 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 P2RX5Q93086 422 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 CCDC17Q96LX7 622 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 NEK1Q96PY6 1258 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 S1PR5Q9H228 398 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 KANSL2Q9H9L4 492 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 RC3H2Q9HBD1 1191 aaKnown RBP11.32□□□□□ -0.6
CLCN3-208ENST00000512813 PIH1D3Q9NQM4 214 aaKnown RBP11.32□□□□□ -0.6
CLCN3-208ENST00000512813 NCDNQ9UBB6 729 aa11.32□□□□□ -0.6
CLCN3-208ENST00000512813 CNOT1A5YKK6 2376 aaKnown RBP11.32□□□□□ -0.6
CLCN3-208ENST00000512813 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.31□□□□□ -0.6
CLCN3-208ENST00000512813 C2CD4DB7Z1M9 353 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 NKRFO15226 690 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLCN3-208ENST00000512813 CHMP4BP1P59074 171 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 SHC2P98077 582 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 ZNF200P98182 395 aaPredicted RBP11.31□□□□□ -0.6
CLCN3-208ENST00000512813 VARS2Q5ST30 1063 aaKnown RBP11.31□□□□□ -0.6
CLCN3-208ENST00000512813 RBM23Q86U06 439 aaKnown RBP11.31□□□□□ -0.6
CLCN3-208ENST00000512813 VN1R2Q8NFZ6 395 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 WNT8BQ93098 351 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 MCM9Q9NXL9 1143 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 GTF2IRD1Q9UHL9 959 aa11.31□□□□□ -0.6
CLCN3-208ENST00000512813 ITGB1P05556 798 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 ASGR2P07307 311 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 SP9P0CG40 484 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 PMLP29590 882 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 RBM10P98175 930 aaKnown RBP11.3□□□□□ -0.6
CLCN3-208ENST00000512813 NAALADL2Q58DX5 795 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 RIN2Q8WYP3 895 aaPredicted RBP11.3□□□□□ -0.6
CLCN3-208ENST00000512813 RIOK1Q9BRS2 568 aaKnown RBP11.3□□□□□ -0.6
CLCN3-208ENST00000512813 TSHZ2Q9NRE2 1034 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 RNF146Q9NTX7 359 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 PTPRCP08575 1304 aa11.3□□□□□ -0.6
CLCN3-208ENST00000512813 KINO60870 393 aaKnown RBP11.29□□□□□ -0.6
CLCN3-208ENST00000512813 ZIC2O95409 532 aaPredicted RBP11.29□□□□□ -0.6
CLCN3-208ENST00000512813 UBTFL1P0CB47 393 aaPredicted RBP11.29□□□□□ -0.6
CLCN3-208ENST00000512813 PPP2R5BQ15173 497 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 TMED8Q6PL24 325 aaPredicted RBP11.29□□□□□ -0.6
CLCN3-208ENST00000512813 SPPL3Q8TCT6 385 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 SEPT8Q92599 483 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 KIFC2Q96AC6 838 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 DYNLL2Q96FJ2 89 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 TLE6Q9H808 572 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 GPR108Q9NPR9 543 aa11.29□□□□□ -0.6
CLCN3-208ENST00000512813 GREB1LQ9C091 1923 aaPredicted RBP11.29□□□□□ -0.6
CLCN3-208ENST00000512813 KIAA1671Q9BY89 1806 aa11.28□□□□□ -0.6
CLCN3-208ENST00000512813 LOC102724159A0A0B4J2E5 919 aa11.28□□□□□ -0.6
CLCN3-208ENST00000512813 RSPH10B2B2RC85 870 aa11.28□□□□□ -0.6
CLCN3-208ENST00000512813 RSPH10BP0C881 870 aa11.28□□□□□ -0.6
CLCN3-208ENST00000512813 CYP2D6P10635 497 aa11.28□□□□□ -0.6
CLCN3-208ENST00000512813 ZAP70P43403 619 aa11.28□□□□□ -0.6
CLCN3-208ENST00000512813 PWP2Q15269 919 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms