RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PHLPP2Q6ZVD8 1323 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 GOLGA6L9A6NEM1 432 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 TPM1P09493 284 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 SYCP1Q15431 976 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 TMEM39BQ9GZU3 492 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 KDM3AQ9Y4C1 1321 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 HSP90AA2PQ14568 343 aaPredicted RBP23.58■■□□□ 1.37
CCDC88B-208ENST00000492980 RAD9BQ6WBX8 426 aa23.58■■□□□ 1.37
CCDC88B-208ENST00000492980 MB21D1Q8N884 522 aa23.58■■□□□ 1.37
CCDC88B-208ENST00000492980 ZNF507Q8TCN5 953 aa23.58■■□□□ 1.37
CCDC88B-208ENST00000492980 UIMC1Q96RL1 719 aa23.58■■□□□ 1.37
CCDC88B-208ENST00000492980 DESI2Q9BSY9 194 aa23.58■■□□□ 1.37
CCDC88B-208ENST00000492980 FOSP01100 380 aaPredicted RBP23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 SREBF1P36956 1147 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 STAT2P52630 851 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 DDX12PQ92771 950 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 SEMA6BQ9H3T3 888 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 L2HGDHQ9H9P8 463 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 GOPCQ9HD26 462 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 SPDYE3A6NKU9 549 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 RNF225M0QZC1 329 aaPredicted RBP23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 TBC1D12O60347 775 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 EHHADHQ08426 723 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 NCBP1Q09161 790 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 CENPPQ6IPU0 288 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 FAM83AQ86UY5 434 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 SLFN12Q8IYM2 578 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 ETNPPLQ8TBG4 499 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 ANKRD7Q92527 254 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 ZBED3Q96IU2 234 aaPredicted RBP23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 MAP7D2Q96T17 732 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 NT5C3AQ9H0P0 336 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 DNAI1Q9UI46 699 aa23.57■■□□□ 1.36
CCDC88B-208ENST00000492980 A0A1W2PQC6 194 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 SLC26A4O43511 780 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 CXCL9Q07325 125 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 Q4G0T1 1027 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 ABHD10Q9NUJ1 306 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 FAM83BQ5T0W9 1011 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 MTERF4Q7Z6M4 381 aaKnown RBP23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 FAM114A1Q8IWE2 563 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 LENG9Q96B70 501 aa23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 CNOT6LQ96LI5 555 aaKnown RBP23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 ZNF215Q9UL58 517 aaPredicted RBP23.56■■□□□ 1.36
CCDC88B-208ENST00000492980 FANCGO15287 622 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 IDEP14735 1019 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 PRR16Q569H4 304 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 DNAJC19Q96DA6 116 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 TUBGCP2Q9BSJ2 902 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 PIM2Q9P1W9 311 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 PGAP2Q9UHJ9 254 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 SMCHD1A6NHR9 2005 aa23.55■■□□□ 1.36
CCDC88B-208ENST00000492980 PIK3CDO00329 1044 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 TBX3O15119 743 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 HOXA7P31268 230 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 STAT3P40763 770 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 GUF1Q8N442 669 aaKnown RBP23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 EEF2KMTQ96G04 330 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 PDCL3Q9H2J4 239 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 ADGRG1Q9Y653 693 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 CCDC175P0C221 793 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 HOXA13P31271 388 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 SPIRE1Q08AE8 756 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 PSMD2Q13200 908 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 MIGA2Q7L4E1 593 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 MRPL44Q9H9J2 332 aaKnown RBP23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 KIAA1024Q9UPX6 916 aa23.54■■□□□ 1.36
CCDC88B-208ENST00000492980 FER1L6Q2WGJ9 1857 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 POTEB3A0JP26 581 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 POTECB2RU33 542 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 B4DLN1 442 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 E9PMD0 336 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 FAM86B1E9PN63 330 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 SLU7O95391 586 aaKnown RBP23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 FAM86B2P0C5J1 330 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 PRKCSHP14314 528 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 CIITAP33076 1130 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 DNM2P50570 870 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 POTEBQ6S5H4 581 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 VCPKMTQ9H867 229 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 CAP2P40123 477 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 TGFB2P61812 414 aa23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 NAA30Q147X3 362 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-208ENST00000492980 PES1O00541 588 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 WNT10BO00744 389 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 MED24O75448 989 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 KRT9P35527 623 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 ERVK-24P63145 666 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 COASYQ13057 564 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 NBPF9Q3BBW0 867 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 TMTC1Q8IUR5 882 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 ERO1AQ96HE7 468 aa23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 RANBP17Q9H2T7 1088 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-208ENST00000492980 CYP3A4P08684 503 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 PLA2G4BP0C869 781 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 TRAF1Q13077 416 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 CIAPIN1Q6FI81 312 aa23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 BRCA1P38398 1863 aaKnown RBP23.51■■□□□ 1.35
CCDC88B-208ENST00000492980 TTC26A0AVF1 554 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms