RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PPATQ06203 517 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CROCCP2Q86T23 111 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 C10orf67Q8IYJ2 551 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 FAM76AQ8TAV0 307 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 FAM136AQ96C01 138 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CEP63Q96MT8 703 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CCT8L2Q96SF2 557 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 MKNK2Q9HBH9 465 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 JADE2Q9NQC1 790 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ARHGEF3Q9NR81 526 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 PRKAG3Q9UGI9 489 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 LAMB2P55268 1798 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 O00370 1275 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 BNIP1Q12981 228 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ACVR2BQ13705 512 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 LRRC24Q50LG9 513 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ATXN2LQ8WWM7 1075 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 LPIN2Q92539 896 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 LUC7L2Q9Y383 392 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 IFIT1P09914 478 aaKnown RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 SLC5A1P13866 664 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ENPEPQ07075 957 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 MAP3K12Q12852 859 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 PPP2R5EQ16537 467 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZBTB38Q8NAP3 1195 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF526Q8TF50 670 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 HDAC7Q8WUI4 952 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 HAPLN3Q96S86 360 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 SPZ1Q9BXG8 430 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CEP126Q9P2H0 1117 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 TRAF3IP3Q9Y228 551 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZPR1O75312 459 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 GCFC2P16383 781 aaKnown RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 METAP2P50579 478 aaKnown RBP eCLIP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 USP11P51784 963 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 PFKFB3Q16875 520 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 IQCEQ6IPM2 695 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 BICDL1Q6ZP65 573 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 USP38Q8NB14 1042 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 BCAS4Q8TDM0 211 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZIM3Q96PE6 472 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CSRNP2Q9H175 543 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 DENND2AQ9ULE3 1009 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 OCRLQ01968 901 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 SEPT2Q15019 361 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 SLC10A5Q5PT55 438 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ADGRG6Q86SQ4 1221 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 IFNL3Q8IZI9 196 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 TMEM237Q96Q45 408 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CARD9Q9H257 536 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 DDX20Q9UHI6 824 aaKnown RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 NCANO14594 1321 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 GOLGA6BA6NDN3 693 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 GUCY1A2P33402 732 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 GYS2P54840 703 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 IRX1P78414 480 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF844Q08AG5 666 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 HSP90B2PQ58FF3 399 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CWC25Q9NXE8 425 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ERLIN2O94905 339 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 EIF3BP55884 814 aaKnown RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 LRRC63Q05C16 580 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 MYBPC2Q14324 1141 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ITIH4Q14624 930 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 DPY19L2Q6NUT2 758 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 PDXDC1Q6P996 788 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 MOXD1Q6UVY6 613 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 USHBP1Q8N6Y0 703 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 FAM163AQ96GL9 167 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZFP91Q96JP5 570 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 STRA6Q9BX79 667 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 GANQ9H2C0 597 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CENPHQ9H3R5 247 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 TAF1DQ9H5J8 278 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 DISC1Q9NRI5 854 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ATP8A2Q9NTI2 1148 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 VPS18Q9P253 973 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 EPHB6O15197 1021 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 NKRFO15226 690 aaKnown RBP eCLIP5.92□□□□□ -1.46
SYNE1-220ENST00000471834 STRNO43815 780 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 NPTXRO95502 500 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CCNB1P14635 433 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC26Q8TAB7 109 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 ZMYND12Q9H0C1 365 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 NR2E3Q9Y5X4 410 aa5.92□□□□□ -1.46
SYNE1-220ENST00000471834 PALM3A6NDB9 673 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 GLI1P08151 1106 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 MAP2K2P36507 400 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 NAB2Q15742 525 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 EGFL6Q8IUX8 553 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 BORCS6Q96GS4 357 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 OSBPL9Q96SU4 736 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 STK17AQ9UEE5 414 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 TPX2Q9ULW0 747 aaKnown RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 A0A1B0GUA9 196 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 MYO1FO00160 1098 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 TIMM10P62072 90 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 PAK1Q13153 545 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 SART3Q15020 963 aaKnown RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms