RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CLRN2A0PK11 232 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L15C9J2P7 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L13C9JLJ4 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L11C9JVI0 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L18D6R9N7 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L22D6RA61 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L17D6RBQ6 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L19D6RCP7 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L20D6RJB6 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 RIOK3O14730 519 aaKnown RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 OPLAHO14841 1288 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 WDR46O15213 610 aaKnown RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 ZSCAN12O43309 604 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 CTNND1O60716 968 aaKnown RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 FGFR1OPO95684 399 aaKnown RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 PTGER2P43116 358 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 LRRC63Q05C16 580 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 SPIRE1Q08AE8 756 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L24Q0WX57 530 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 KRT31Q15323 416 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 TPD52L1Q16890 204 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 SHROOM1Q2M3G4 852 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 E4F1Q66K89 784 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 HAUS3Q68CZ6 603 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 KLHL10Q6JEL2 608 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 USP17L6PQ6QN14 398 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 IRF2BP1Q8IU81 584 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 TMEM139Q8IV31 216 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 CNGA4Q8IV77 575 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 HS6ST3Q8IZP7 471 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 TC2NQ8N9U0 490 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 ERMNQ8TAM6 284 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 ACER1Q8TDN7 264 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 SNX29Q8TEQ0 813 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 STAMQ92783 540 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 P2RX5Q93086 422 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 LENG9Q96B70 501 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 POLR3CQ9BUI4 534 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 TMEM39BQ9GZU3 492 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 KIAA1683Q9H0B3 1180 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 BMP2KQ9NSY1 1161 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-208ENST00000468792 CTNND2Q9UQB3 1225 aa8.52□□□□□ -1.05
COL6A3-208ENST00000468792 FRMD3A2A2Y4 597 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 MYMKA6NI61 221 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 KCNJ18B7U540 433 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 AKR1B15C9JRZ8 316 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 GCOM1H8Y6P7 765 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 MARCH6O60337 910 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 KIF20AO95235 890 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 POLR2MP0CAP2 368 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 TNNT1P13805 278 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 RPA1P27694 616 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 ECE1P42892 770 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 DNM2P50570 870 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 COPB1P53618 953 aaKnown RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 ASIC1P78348 528 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 PDE4DQ08499 809 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 KCNJ12Q14500 433 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 RASA3Q14644 834 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 SYCP1Q15431 976 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 PTPN14Q15678 1187 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 NBPF9Q3BBW0 867 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 FIGNQ5HY92 759 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 ARHGAP27Q6ZUM4 889 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 NIPA1Q7RTP0 329 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 SMYD4Q8IYR2 804 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 C17orf53Q8N3J3 647 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 PRPF38AQ8NAV1 312 aaKnown RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 RETREG2Q8NC44 543 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 ZNF507Q8TCN5 953 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 DNAJC19Q96DA6 116 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 NUP88Q99567 741 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 BAG1Q99933 345 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-208ENST00000468792 WDR18Q9BV38 432 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 VEZTQ9HBM0 779 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 ZNF112Q9UJU3 913 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 GDAQ9Y2T3 454 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 PPP2R3BQ9Y5P8 575 aa8.51□□□□□ -1.05
COL6A3-208ENST00000468792 POTEMA6NI47 508 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 LGALS16A8MUM7 142 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 N4BP3O15049 544 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 CTIFO43310 598 aaKnown RBP8.5□□□□□ -1.05
COL6A3-208ENST00000468792 ZBTB7AO95365 584 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 ICAM1P05362 532 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 TPM1P09493 284 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 BCRP11274 1271 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 HSD17B4P51659 736 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 USP14P54578 494 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 STX17P56962 302 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 SETQ01105 290 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-208ENST00000468792 STK4Q13043 487 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 IKQ13123 557 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-208ENST00000468792 KIAA1755Q5JYT7 1200 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 FAM83BQ5T0W9 1011 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 CEP135Q66GS9 1140 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 DCAF15Q66K64 600 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 PPFIBP1Q86W92 1011 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 MCF2L2Q86YR7 1114 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 KIAA0895Q8NCT3 520 aa8.5□□□□□ -1.05
COL6A3-208ENST00000468792 P2RX7Q99572 595 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms