RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 KLHL6Q8WZ60 621 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 TTC1Q99614 292 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 DHRS4Q9BTZ2 278 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 THG1LQ9NWX6 298 aaKnown RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 FBXL21Q9UKT6 434 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PDZRN3Q9UPQ7 1066 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 DOT1LQ8TEK3 1739 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PLEKHG2Q9H7P9 1386 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 A0A1B0GVC2 190 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 TBX3O15119 743 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 VAMP4O75379 141 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 IGHDP01880 384 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 C6orf222P0C671 652 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 IMPDH2P12268 514 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 ERVK-21P61565 698 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 TNP2Q05952 138 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 PIN1Q13526 163 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 SNW1Q13573 536 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 UBE3DQ7Z6J8 389 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 NLRP8Q86W28 1048 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 IL22RA1Q8N6P7 574 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 ST13P5Q8NFI4 369 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 RNF166Q96A37 237 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 WNK4Q96J92 1243 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 OSBPL5Q9H0X9 879 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 CYP8B1Q9UNU6 501 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 PIK3C2GO75747 1445 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 COL5A2P05997 1499 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 CCDC163A0A0D9SF12 145 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 PTPRAP18433 802 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 GUCY1A3Q02108 690 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 FSTL1Q12841 308 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 CCDC93Q567U6 631 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 KCNT2Q6UVM3 1135 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 KRT77Q7Z794 578 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 CATIPQ7Z7H3 387 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 MTDHQ86UE4 582 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 TMEM192Q8IY95 271 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 SARGQ9BW04 601 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 GPRC5CQ9NQ84 441 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 ATG3Q9NT62 314 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 DDX20Q9UHI6 824 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 PCDHGB6Q9Y5F9 930 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 ADAMTSL1Q8N6G6 1762 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 DYTNA2CJ06 578 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 SPATA31C2B4DYI2 1134 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 RNGTTO60942 597 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 H2AFYO75367 372 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 B3GALT4O96024 378 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 EGFRP00533 1210 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 SOD2P04179 222 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 NME1P15531 152 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 TM4SF4P48230 202 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 NEUROD1Q13562 356 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 GBX1Q14549 363 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 LRRC14Q15048 493 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 COBLL1Q53SF7 1204 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 TOGARAM2Q6ZUX3 1019 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 HDXQ7Z353 690 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 ZNF227Q86WZ6 799 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 REXO1Q8N1G1 1221 aaKnown RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 RIN3Q8TB24 985 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 KLHDC7BQ96G42 594 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 CHAMP1Q96JM3 812 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 TM9SF2Q99805 663 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 RUSC1Q9BVN2 902 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 BHLHE41Q9C0J9 482 aaPredicted RBP3.18□□□□□ -1.9
MCF2-204ENST00000414978 SLC12A5Q9H2X9 1139 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 AAASQ9NRG9 546 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 GMIPQ9P107 970 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 HCSTQ9UBK5 93 aa3.18□□□□□ -1.9
MCF2-204ENST00000414978 A0A087WZG4 1122 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 TRAV20A0A0B4J274 112 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 ALG1L2C9J202 215 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 NOP56O00567 594 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 ADGRB1O14514 1584 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 NRDCO43847 1150 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DNAJC8O75937 253 aaPredicted RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 CD53P19397 219 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 ALDH5A1P51649 535 aaPredicted RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 MON2Q7Z3U7 1717 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 OSBP2Q969R2 916 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 RUNDC1Q96C34 613 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 ACSF2Q96CM8 615 aaPredicted RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 AARSD1Q9BTE6 412 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 RSAD1Q9HA92 442 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 FBRSQ9HAH7 460 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DISC1Q9NRI5 854 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 C14orf119Q9NWQ9 140 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DYRK1BQ9Y463 629 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 MAP2P11137 1827 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 LAMB1P07942 1786 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 EYA2O00167 538 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 STXBP3O00186 592 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 CBFA2T2O43439 604 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 CAND2O75155 1236 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 PABPC1P11940 636 aaKnown RBP3.17□□□□□ -1.9
MCF2-204ENST00000414978 BMP4P12644 408 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 OSMP13725 252 aa3.17□□□□□ -1.9
MCF2-204ENST00000414978 DNM2P50570 870 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms