RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ZSCAN12O43309 604 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 TRIM21P19474 475 aaKnown RBP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 POLD1P28340 1107 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 KLK7P49862 253 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 SPAG1Q07617 926 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 HERC4Q5GLZ8 1057 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 CNNM4Q6P4Q7 775 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 IRF2BP1Q8IU81 584 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 UPF1Q92900 1129 aaKnown RBP eCLIP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 P2RX5Q93086 422 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 TUBGCP2Q9BSJ2 902 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 ZNF341Q9BYN7 854 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 FAM86B1E9PN63 330 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 GYPCP04921 128 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 FAM86B2P0C5J1 330 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 TBX2Q13207 712 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 RAD54LQ92698 747 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 NOC4LQ9BVI4 516 aaKnown RBP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 GOPCQ9HD26 462 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 HERC5Q9UII4 1024 aaKnown RBP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 DDX39AO00148 427 aaKnown RBP12.42□□□□□ -0.42
TCOF1-203ENST00000394269 FXR2P51116 673 aaKnown RBP eCLIP12.42□□□□□ -0.421e-6■■■■□ 21.9
TCOF1-203ENST00000394269 GPR162Q16538 588 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 TSR1Q2NL82 804 aaKnown RBP12.42□□□□□ -0.42
TCOF1-203ENST00000394269 PPP4R3AQ6IN85 833 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 KIAA0895Q8NCT3 520 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 CUEDC2Q9H467 287 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 ZSWIM4Q9H7M6 989 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 COL11A2P13942 1736 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-203ENST00000394269 STX10O60499 249 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 CLK2P49760 499 aaKnown RBP12.42□□□□□ -0.42
TCOF1-203ENST00000394269 KCNB1Q14721 858 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 PPP1R18Q6NYC8 613 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 GPBP1Q86WP2 473 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 CNOT6LQ96LI5 555 aaKnown RBP12.42□□□□□ -0.42
TCOF1-203ENST00000394269 C7orf25Q9BPX7 421 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 MYOZ2Q9NPC6 264 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 PSMC6P62333 389 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 PDIA5Q14554 519 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 RAD9BQ6WBX8 426 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 TMEM139Q8IV31 216 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 ACRBPQ8NEB7 543 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 PSMD1Q99460 953 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 SLF1Q9BQI6 1058 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 RGL1Q9NZL6 768 aa12.42□□□□□ -0.42
TCOF1-203ENST00000394269 SFI1A8K8P3 1242 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 CCNE1P24864 410 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 ETF1P62495 437 aaKnown RBP12.41□□□□□ -0.42
TCOF1-203ENST00000394269 MTMR8Q96EF0 704 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 DUSP9Q99956 384 aaKnown RBP12.41□□□□□ -0.42
TCOF1-203ENST00000394269 PANK4Q9NVE7 773 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.41□□□□□ -0.425e-7■■■□□ 15.1
TCOF1-203ENST00000394269 TRAF5O00463 557 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 MFAP3LO75121 409 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 MED24O75448 989 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 PLA2G4BP0C869 781 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 RASSF7Q02833 373 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 CT47A1Q5JQC4 288 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-203ENST00000394269 TTI2Q6NXR4 508 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 GMCL1P1Q8NEA9 526 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 PIGOQ8TEQ8 1089 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 GMCL1Q96IK5 515 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 AGBL1Q96MI9 1066 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 GMLQ99445 158 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 SEMA6BQ9H3T3 888 aa12.41□□□□□ -0.42
TCOF1-203ENST00000394269 LIMA1Q9UHB6 759 aaKnown RBP12.41□□□□□ -0.42
TCOF1-203ENST00000394269 TTC26A0AVF1 554 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 SYCP1Q15431 976 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 ENOX2Q16206 610 aaKnown RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 TPH2Q8IWU9 490 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 REXO1L1PQ8IX06 675 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 ZNF710Q8N1W2 664 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 DHTKD1Q96HY7 919 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 WDR24Q96S15 920 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CHP1Q99653 195 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 MMRN2Q9H8L6 949 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 FAM207AQ9NSI2 230 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 TFR2Q9UP52 801 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 LUC7L2Q9Y383 392 aaKnown RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CTDP1Q9Y5B0 961 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 BICDL2A1A5D9 508 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 GCFC2P16383 781 aaKnown RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CTTNQ14247 550 aaKnown RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CNGA4Q8IV77 575 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 ZMYND15Q9H091 742 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 MRPL44Q9H9J2 332 aaKnown RBP12.4□□□□□ -0.42
TCOF1-203ENST00000394269 STK17AQ9UEE5 414 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 DLEC1Q9Y238 1755 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CCP110O43303 1012 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 MYL1P05976 194 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CCDC175P0C221 793 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CAP2P40123 477 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 USP11P51784 963 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 ARHGAP29Q52LW3 1261 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 UNC13DQ70J99 1090 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 MAEAQ7L5Y9 396 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 MB21D1Q8N884 522 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 LRRN4CLQ8ND94 238 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CHURC1Q8WUH1 139 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms