RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ARL4AP40617 200 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 C10orf76Q5T2E6 689 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 MAGOHBQ96A72 148 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 NACC1Q96RE7 527 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 LMCD1Q9NZU5 365 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 TLK1Q9UKI8 766 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 KIAA1024Q9UPX6 916 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 HNRNPCL2B2RXH8 293 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 TMEM232C9JQI7 657 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 HNRNPCL1O60812 293 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 PPARGP37231 505 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 MYLK4Q86YV6 388 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 CCDC24Q8N4L8 307 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 PGBD1Q96JS3 809 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 DNAJC10Q8IXB1 793 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 TAB3Q8N5C8 712 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 NRBF2Q96F24 287 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 TTC25Q96NG3 672 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 ADD3Q9UEY8 706 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 SLC13A4Q9UKG4 626 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 PLEKHG3A1L390 1219 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 DNAAF3Q8N9W5 541 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 GCNAQ96QF7 691 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 MRPL47Q9HD33 250 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 ZSCAN20P17040 1043 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 KCTD6Q8NC69 237 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 SDR42E1Q8WUS8 393 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 FGD4Q96M96 766 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 TMEM206Q9H813 350 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 KIAA0232Q92628 1395 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 NFKBIAP25963 317 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 HOXA7P31268 230 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 EHHADHQ08426 723 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 PTGDRQ13258 359 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 GPR162Q16538 588 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 SGO2Q562F6 1265 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 KMT5AQ9NQR1 393 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 SUCLA2Q9P2R7 463 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 GPATCH4Q5T3I0 446 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 ELMSAN1Q6PJG2 1045 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 DHTKD1Q96HY7 919 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 BCS1LQ9Y276 419 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 MAPKBP1O60336 1514 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 ABCC12Q96J65 1359 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 KCNA6P17658 529 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 ANXA13P27216 316 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 KLC3Q6P597 504 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 CCNYQ8ND76 341 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 AMNQ9BXJ7 453 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 PCDHA1Q9Y5I3 950 aa13.87□□□□□ -0.19
CCDC88C-204ENST00000389857 ZMYM3Q14202 1370 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 MYO1EQ12965 1108 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 SLC12A1Q13621 1099 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 PI4K2BQ8TCG2 481 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 SLC7A3Q8WY07 619 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 ZNF653Q96CK0 615 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 MID2Q9UJV3 735 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 UHMK1Q8TAS1 419 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 PCDHA4Q9UN74 947 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 WDR64B1ANS9 1081 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 BRD1O95696 1058 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 FBXL13Q8NEE6 735 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 NUDCD1Q96RS6 583 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 TRAPPC10P48553 1259 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 SCNN1DP51172 638 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 DARS2Q6PI48 645 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 DEPDC1BQ8WUY9 529 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 GJA10Q969M2 543 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 FANCLQ9NW38 375 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 PRKAG2Q9UGJ0 569 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 TBX22Q9Y458 520 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 ECEL1O95672 775 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 KRT1P04264 644 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 LARP4BQ92615 738 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 TUBGCP2Q9BSJ2 902 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 CARD14Q9BXL6 1004 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 BCL2L12Q9HB09 334 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 KIF21AQ7Z4S6 1674 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 ART3Q13508 389 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 SCYL3Q8IZE3 742 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 CCDC17Q96LX7 622 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 SERPINI1Q99574 410 aa13.86□□□□□ -0.19
CCDC88C-204ENST00000389857 SEMA3EO15041 775 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 CNKSR1Q969H4 720 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 MRFAP1L1Q96HT8 127 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 SCHIP1Q9P0W5 487 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 DAAM1Q9Y4D1 1078 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 BLMP54132 1417 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 GOLGA8HP0CJ92 632 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 EPHB4P54760 987 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 PBKQ96KB5 322 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 FOXP1Q9H334 677 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 ZSWIM6Q9HCJ5 1215 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 TXLNGQ9NUQ3 528 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 ATP10BO94823 1461 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 PPP6R2O75170 966 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 TTLL1O95922 423 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 CHEK2O96017 543 aa13.85□□□□□ -0.19
CCDC88C-204ENST00000389857 HSPD1P10809 573 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms