RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 GDAP1L1Q96MZ0 367 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 FTOQ9C0B1 505 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 SYNMO15061 1565 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 GTPBP10A4D1E9 387 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 EEF1B2P24534 225 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 MKRN3Q13064 507 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 MTX1Q13505 466 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 SNX1Q13596 522 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 GCKRQ14397 625 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 DOK7Q18PE1 504 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 MFSD14BQ5SR56 506 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 POLR3CQ9BUI4 534 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 RIPOR2Q9Y4F9 1068 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 SLC27A2O14975 620 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 CERKLQ49MI3 558 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 FBXO11Q86XK2 927 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 NUDCD1Q96RS6 583 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 KPNA2P52292 529 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 TRMT44Q8IYL2 757 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 WDR48Q8TAF3 677 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 KLHDC4Q8TBB5 520 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 RNF139Q8WU17 664 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 RPGRIP1Q96KN7 1286 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 UNC13BO14795 1591 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 CEP152O94986 1710 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 SH3BGRP55822 239 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TAF11Q15544 211 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 GLE1Q53GS7 698 aaKnown RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TRMT10CQ7L0Y3 403 aaKnown RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 KRT27Q7Z3Y8 459 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 LRRC47Q8N1G4 583 aaKnown RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 CNKSR1Q969H4 720 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 NACC1Q96RE7 527 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 THEGQ9P2T0 379 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ARPP21Q9UBL0 812 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TLK1Q9UKI8 766 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PTPN22Q9Y2R2 807 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PTPRMP28827 1452 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 H3BRJ5 948 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 DTNBO60941 627 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PMLP29590 882 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 SPOPLQ6IQ16 392 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PLEKHM2Q8IWE5 1019 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TRIM59Q8IWR1 403 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 SMAP1Q8IYB5 467 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 EXT2Q93063 718 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 DBNDD2Q9BQY9 259 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 DCTPP1Q9H773 170 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 FAM135BQ49AJ0 1406 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 HOXB7P09629 217 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PPARGP37231 505 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TRIM67Q6ZTA4 783 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 G2E3Q7L622 706 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 EXOC8Q8IYI6 725 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PI4K2BQ8TCG2 481 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 DDX25Q9UHL0 483 aaKnown RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ARHGEF37A1IGU5 675 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 MAFGO15525 162 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TRIM37O94972 964 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ARL4AP40617 200 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 RPS8P62241 208 aaKnown RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ZBTB17Q13105 803 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ARHGEF18Q6ZSZ5 1173 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 KRT26Q7Z3Y9 468 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 IQCDQ96DY2 449 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ZMAT2Q96NC0 199 aaKnown RBP11.05□□□□□ -0.64
CLIP1-202ENST00000358808 PPP1R16BQ96T49 567 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 TRAIPQ9BWF2 469 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 USP26Q9BXU7 913 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ZSCAN32Q9NX65 697 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 NFE2L3Q9Y4A8 694 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 ZNF532Q9HCE3 1301 aa11.05□□□□□ -0.64
CLIP1-202ENST00000358808 INO80B-WBP1J3KQ70 363 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 NEMP1O14524 444 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 MYL7Q01449 175 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 MCTP2Q6DN12 878 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 FAM173BQ6P4H8 233 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 ARMC9Q7Z3E5 817 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 SIX6OS1Q8N1H7 587 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 INO80BQ9C086 356 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 ZC3H13Q5T200 1668 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 ZNF202O95125 648 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 RECQLP46063 649 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 TMTC3Q6ZXV5 915 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 C7orf31Q8N865 590 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 TEX12Q9BXU0 123 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 TTI1O43156 1089 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 CHMLP26374 656 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 CTSWP56202 376 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 PTK2Q05397 1052 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 NSUN2Q08J23 767 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 AOC3Q16853 763 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 HABP4Q5JVS0 413 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 MIS18BP1Q6P0N0 1132 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 KIAA0825Q8IV33 1275 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 LRRC4Q9HBW1 653 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 CDV3Q9UKY7 258 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 CHEK2O96017 543 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 MFAP3P55082 362 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms