RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PPP4R3AQ6IN85 833 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 PPP1R18Q6NYC8 613 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 CNNM4Q6P4Q7 775 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 IRF2BP1Q8IU81 584 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 KIAA0895Q8NCT3 520 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 RAD54LQ92698 747 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 P2RX5Q93086 422 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 PSMD1Q99460 953 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 TANGO6Q9C0B7 1094 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 GOPCQ9HD26 462 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 MYOZ2Q9NPC6 264 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 HERC5Q9UII4 1024 aaKnown RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 LRRC37AA6NMS7 1700 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 KRT9P35527 623 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 RASSF7Q02833 373 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 CDK5RAP2Q96SN8 1893 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 TUBGCP2Q9BSJ2 902 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 ZNF215Q9UL58 517 aaPredicted RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 DDX39AO00148 427 aaKnown RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 TRIM21P19474 475 aaKnown RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 KCNB1Q14721 858 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 SPDYE2Q495Y8 402 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 TMEM139Q8IV31 216 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 MTMR8Q96EF0 704 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 C7orf25Q9BPX7 421 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 NOC4LQ9BVI4 516 aaKnown RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 CUEDC2Q9H467 287 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 BMP2KQ9NSY1 1161 aaPredicted RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 ZSCAN12O43309 604 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 PSMC6P62333 389 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 SPAG1Q07617 926 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 TBC1D8BQ0IIM8 1120 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 HERC4Q5GLZ8 1057 aaPredicted RBP12.81□□□□□ -0.36
CUX1-202ENST00000292538 GPBP1Q86WP2 473 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 GMCL1P1Q8NEA9 526 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 GMCL1Q96IK5 515 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 CNOT6LQ96LI5 555 aaKnown RBP12.81□□□□□ -0.36
CUX1-202ENST00000292538 GMLQ99445 158 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 PDIA5Q14554 519 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 TTI2Q6NXR4 508 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 ACRBPQ8NEB7 543 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 DUSP9Q99956 384 aaKnown RBP12.81□□□□□ -0.36
CUX1-202ENST00000292538 RGL1Q9NZL6 768 aa12.81□□□□□ -0.36
CUX1-202ENST00000292538 SFI1A8K8P3 1242 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 STX10O60499 249 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 MED24O75448 989 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 PLA2G4BP0C869 781 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 CT47A1Q5JQC4 288 aaPredicted RBP12.8□□□□□ -0.36
CUX1-202ENST00000292538 RAD9BQ6WBX8 426 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 AGBL1Q96MI9 1066 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 SEMA6BQ9H3T3 888 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 PANK4Q9NVE7 773 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 LIMA1Q9UHB6 759 aaKnown RBP12.8□□□□□ -0.36
CUX1-202ENST00000292538 PCNTO95613 3336 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 MFAP3LO75121 409 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 CCNE1P24864 410 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 TSR1Q2NL82 804 aaKnown RBP12.8□□□□□ -0.36
CUX1-202ENST00000292538 PIGOQ8TEQ8 1089 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 FGFBP2Q9BYJ0 223 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 ZSWIM4Q9H7M6 989 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.8□□□□□ -0.368e-7■■□□□ 12.7
CUX1-202ENST00000292538 CNTNAP1P78357 1384 aa12.8□□□□□ -0.36
CUX1-202ENST00000292538 BICDL2A1A5D9 508 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 GCFC2P16383 781 aaKnown RBP12.79□□□□□ -0.36
CUX1-202ENST00000292538 CAP2P40123 477 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 TPH2Q8IWU9 490 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 REXO1L1PQ8IX06 675 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 MICALL2Q8IY33 904 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 ZNF710Q8N1W2 664 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 LRRN4CLQ8ND94 238 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 SLF1Q9BQI6 1058 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 MRPL44Q9H9J2 332 aaKnown RBP12.79□□□□□ -0.36
CUX1-202ENST00000292538 STK17AQ9UEE5 414 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 TFR2Q9UP52 801 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 TMX2Q9Y320 296 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 NRXN2Q9P2S2 1712 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 TTC26A0AVF1 554 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 TRAF5O00463 557 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 OPLAHO14841 1288 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 MYL1P05976 194 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 ETF1P62495 437 aaKnown RBP12.79□□□□□ -0.36
CUX1-202ENST00000292538 CTTNQ14247 550 aaKnown RBP12.79□□□□□ -0.36
CUX1-202ENST00000292538 SYCP1Q15431 976 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 UNC13DQ70J99 1090 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 CATSPER3Q86XQ3 398 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 CNGA4Q8IV77 575 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 MB21D1Q8N884 522 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 DHTKD1Q96HY7 919 aaPredicted RBP12.79□□□□□ -0.36
CUX1-202ENST00000292538 WDR24Q96S15 920 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 CHP1Q99653 195 aa12.79□□□□□ -0.36
CUX1-202ENST00000292538 FAM207AQ9NSI2 230 aaPredicted RBP12.79□□□□□ -0.36
CUX1-202ENST00000292538 ZBTB39O15060 712 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 USP11P51784 963 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CCDC155Q8N6L0 562 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 BCAS3Q9H6U6 928 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 MMRN2Q9H8L6 949 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 MAGEF1Q9HAY2 307 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 AGPAT5Q9NUQ2 364 aa12.78□□□□□ -0.36
CUX1-202ENST00000292538 CTDP1Q9Y5B0 961 aaPredicted RBP12.78□□□□□ -0.36
CUX1-202ENST00000292538 GCOM1H8Y6P7 765 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms