RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 RPS6P62753 249 aaKnown RBP22.79■■□□□ 1.24
CLN3-250ENST00000636839 SNAPC2Q13487 334 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 NSMFQ6X4W1 530 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 MS4A4AQ96JQ5 239 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 A0A087WWV3 80 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 STAT3P40763 770 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 IRX3P78415 501 aaPredicted RBP22.79■■□□□ 1.24
CLN3-250ENST00000636839 LBX2Q6XYB7 198 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 FAM13BQ9NYF5 915 aa22.79■■□□□ 1.24
CLN3-250ENST00000636839 PRR16Q569H4 304 aa22.78■■□□□ 1.24
CLN3-250ENST00000636839 LRSAM1Q6UWE0 723 aa22.78■■□□□ 1.24
CLN3-250ENST00000636839 SYTL5Q8TDW5 730 aaPredicted RBP22.78■■□□□ 1.24
CLN3-250ENST00000636839 SDF4Q9BRK5 362 aa22.78■■□□□ 1.24
CLN3-250ENST00000636839 TEX13BQ9BXU2 312 aa22.78■■□□□ 1.24
CLN3-250ENST00000636839 MYPNQ86TC9 1320 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 FOXN1O15353 648 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 OAZ1P54368 228 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 HERVK_113P62684 666 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 FASTKD5Q7L8L6 764 aaKnown RBP22.77■■□□□ 1.24
CLN3-250ENST00000636839 LENG9Q96B70 501 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 PAGR1Q9BTK6 254 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 TXNRD2Q9NNW7 524 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 CYP3A7-CYP3A51PA0A087WV96 503 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 LAD1O00515 517 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 ATP2A1O14983 1001 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 CYP3A7P24462 503 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 PRPHP41219 470 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 BAATQ14032 418 aaPredicted RBP22.77■■□□□ 1.24
CLN3-250ENST00000636839 MCF2L2Q86YR7 1114 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 IL31RAQ8NI17 732 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 TAAR1Q96RJ0 339 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 SERTAD1Q9UHV2 236 aa22.77■■□□□ 1.24
CLN3-250ENST00000636839 CNMDO75829 334 aa22.76■■□□□ 1.23
CLN3-250ENST00000636839 CYP2C8P10632 490 aa22.76■■□□□ 1.23
CLN3-250ENST00000636839 HUNKP57058 714 aa22.76■■□□□ 1.23
CLN3-250ENST00000636839 RNF207Q6ZRF8 634 aa22.76■■□□□ 1.23
CLN3-250ENST00000636839 MBOAT7Q96N66 472 aa22.76■■□□□ 1.23
CLN3-250ENST00000636839 GPBP1L1Q9HC44 474 aaPredicted RBP22.76■■□□□ 1.23
CLN3-250ENST00000636839 UNCXA6NJT0 531 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 LONP1P36776 959 aaKnown RBP22.75■■□□□ 1.23
CLN3-250ENST00000636839 SPRYD7Q5W111 196 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 MCTP2Q6DN12 878 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 RBM43Q6ZSC3 357 aaKnown RBP22.75■■□□□ 1.23
CLN3-250ENST00000636839 GRAMD1CQ8IYS0 662 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 BRI3BPQ8WY22 251 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 DHX58Q96C10 678 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 FUCA2Q9BTY2 467 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 FSD2A1L4K1 749 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 GCFC2P16383 781 aaKnown RBP22.75■■□□□ 1.23
CLN3-250ENST00000636839 GHRHRQ02643 423 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 ORC2Q13416 577 aaPredicted RBP22.75■■□□□ 1.23
CLN3-250ENST00000636839 KRBA2Q6ZNG9 492 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 PLIN2Q99541 437 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 RBPJLQ9UBG7 517 aa22.75■■□□□ 1.23
CLN3-250ENST00000636839 CYP3A4P08684 503 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 ZNF76P36508 570 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 KARSQ15046 597 aaKnown RBP22.74■■□□□ 1.23
CLN3-250ENST00000636839 Q3C1V9 767 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 TTC12Q9H892 705 aaPredicted RBP22.74■■□□□ 1.23
CLN3-250ENST00000636839 CCL15-CCL14A0A0B4J2E2 113 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 POTEMA6NI47 508 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 BTBD19C9JJ37 291 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 KIF3CO14782 793 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 ACTN4O43707 911 aaKnown RBP22.74■■□□□ 1.23
CLN3-250ENST00000636839 LETM1O95202 739 aaPredicted RBP22.74■■□□□ 1.23
CLN3-250ENST00000636839 CIITAP33076 1130 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 ZRSR1Q15695 479 aaKnown RBP22.74■■□□□ 1.23
CLN3-250ENST00000636839 CCL15Q16663 113 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 CNNM3Q8NE01 707 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 RBSNQ9H1K0 784 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 KCNMB3Q9NPA1 279 aa22.74■■□□□ 1.23
CLN3-250ENST00000636839 IGLV3-22A0A075B6J6 115 aa22.73■■□□□ 1.23
CLN3-250ENST00000636839 EIF2AK2P19525 551 aaKnown RBP22.73■■□□□ 1.23
CLN3-250ENST00000636839 LRRC15Q8TF66 581 aa22.73■■□□□ 1.23
CLN3-250ENST00000636839 PTPN18Q99952 460 aa22.73■■□□□ 1.23
CLN3-250ENST00000636839 SPATC1LQ9H0A9 340 aa22.73■■□□□ 1.23
CLN3-250ENST00000636839 A1CFQ9NQ94 594 aaKnown RBP22.73■■□□□ 1.23
CLN3-250ENST00000636839 RPTORQ8N122 1335 aa22.73■■□□□ 1.23
CLN3-250ENST00000636839 GTF2A2P52657 109 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 PNOCQ13519 176 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 Q4G0T1 1027 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 IGSF22Q8N9C0 903 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 ETNPPLQ8TBG4 499 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 TIGD1Q96MW7 591 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 NUDT12Q9BQG2 462 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 MMTAG2Q9BU76 263 aaKnown RBP22.72■■□□□ 1.23
CLN3-250ENST00000636839 PNMA2Q9UL42 364 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 GOLGA6L3A6NEY3 463 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 MSH4O15457 936 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 MARCH6O60337 910 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 CETPP11597 493 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 MOXD1Q6UVY6 613 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 STAMQ92783 540 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 ACAD9Q9H845 621 aa22.72■■□□□ 1.23
CLN3-250ENST00000636839 PASKQ96RG2 1323 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 PDHXO00330 501 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 PRR29P0C7W0 189 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 OSBPP22059 807 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 FXR2P51116 673 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-250ENST00000636839 E2F4Q16254 413 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms