RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZBED3Q96IU2 234 aaPredicted RBP16.24■□□□□ 0.19
VRK3-217ENST00000599538 VPS16Q9H269 839 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 TAB2Q9NYJ8 693 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 TMX2Q9Y320 296 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 NFKBIEO00221 500 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 HOXA13P31271 388 aaPredicted RBP16.24■□□□□ 0.19
VRK3-217ENST00000599538 TCP11X2Q5H9J9 407 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 DYMQ7RTS9 669 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 MAGEF1Q9HAY2 307 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 LIMA1Q9UHB6 759 aaKnown RBP16.24■□□□□ 0.19
VRK3-217ENST00000599538 LRRC10BA6NIK2 292 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 KCNJ18B7U540 433 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 KCNJ12Q14500 433 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 MTMR14Q8NCE2 650 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 KIAA0895Q8NCT3 520 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 CPLX3Q8WVH0 158 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 TBC1D5Q92609 795 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 LARP4BQ92615 738 aaKnown RBP16.23■□□□□ 0.19
VRK3-217ENST00000599538 PCDHA12Q9UN75 941 aa16.23■□□□□ 0.19
VRK3-217ENST00000599538 GCFC2P16383 781 aaKnown RBP16.22■□□□□ 0.19
VRK3-217ENST00000599538 TGFB2P61812 414 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 ARHGAP4P98171 946 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 RBL2Q08999 1139 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 DALRD3Q5D0E6 543 aaKnown RBP16.22■□□□□ 0.19
VRK3-217ENST00000599538 KRT79Q5XKE5 535 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 TTI2Q6NXR4 508 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 SV2BQ7L1I2 683 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 DUSP9Q99956 384 aaKnown RBP16.22■□□□□ 0.19
VRK3-217ENST00000599538 VPS33BQ9H267 617 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 ARHGEF10LQ9HCE6 1279 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 EXOC1Q9NV70 894 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 MARCH6O60337 910 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 STAT3P40763 770 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 KCNJ6P48051 423 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 STAT2P52630 851 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 COPB1P53618 953 aaKnown RBP16.22■□□□□ 0.19
VRK3-217ENST00000599538 RBM10P98175 930 aaKnown RBP16.22■□□□□ 0.19
VRK3-217ENST00000599538 TMEM119Q4V9L6 283 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 CIAPIN1Q6FI81 312 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 RAD54LQ92698 747 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 CDK5RAP3Q96JB5 506 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 CTAGE1Q96RT6 745 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 TAOK3Q9H2K8 898 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 SLC39A2Q9NP94 309 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 KCNMB3Q9NPA1 279 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 MYOZ2Q9NPC6 264 aa16.22■□□□□ 0.19
VRK3-217ENST00000599538 FER1L6Q2WGJ9 1857 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 ASTN2O75129 1339 aaPredicted RBP16.21■□□□□ 0.19
VRK3-217ENST00000599538 PSDA5PKW4 1024 aaPredicted RBP16.21■□□□□ 0.19
VRK3-217ENST00000599538 RNF225M0QZC1 329 aaPredicted RBP16.21■□□□□ 0.19
VRK3-217ENST00000599538 N4BP3O15049 544 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 NKRFO15226 690 aaKnown RBP eCLIP16.21■□□□□ 0.19
VRK3-217ENST00000599538 CAP2P40123 477 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 USP11P51784 963 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 FKBP1CQ5VVH2 108 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 SAMD1Q6SPF0 538 aaPredicted RBP16.21■□□□□ 0.19
VRK3-217ENST00000599538 CCDC112Q8NEF3 446 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 CYP2W1Q8TAV3 490 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 BAG1Q99933 345 aaPredicted RBP16.21■□□□□ 0.19
VRK3-217ENST00000599538 SRRTQ9BXP5 876 aaKnown RBP16.21■□□□□ 0.19
VRK3-217ENST00000599538 RAB34Q9BZG1 259 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 GLT8D2Q9H1C3 349 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 STK17AQ9UEE5 414 aa16.21■□□□□ 0.19
VRK3-217ENST00000599538 CYP3A7-CYP3A51PA0A087WV96 503 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 FAM86B1E9PN63 330 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 H7C1D1 291 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 PSMA7O14818 248 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 FAM86B2P0C5J1 330 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 CYP3A7P24462 503 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 GTF2F1P35269 517 aaKnown RBP eCLIP16.21■□□□□ 0.18
VRK3-217ENST00000599538 MMP14P50281 582 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 PRR16Q569H4 304 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 ANKRD40Q6AI12 368 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 FAM83AQ86UY5 434 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 GLIS3Q8NEA6 775 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 LENG9Q96B70 501 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 TRIM47Q96LD4 638 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 MBOAT7Q96N66 472 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 FBXO28Q9NVF7 368 aa16.21■□□□□ 0.18
VRK3-217ENST00000599538 BRCA1P38398 1863 aaKnown RBP16.2■□□□□ 0.18
VRK3-217ENST00000599538 TBC1D12O60347 775 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 GYPCP04921 128 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 FXR1P51114 621 aaKnown RBP eCLIP16.2■□□□□ 0.18
VRK3-217ENST00000599538 PRELPP51888 382 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 AMPD3Q01432 767 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 AP3B2Q13367 1082 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 MTF1Q14872 753 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 FILIP1LQ4L180 1135 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 CCDC174Q6PII3 467 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 DDX12PQ92771 950 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 KIFC2Q96AC6 838 aa16.2■□□□□ 0.18
VRK3-217ENST00000599538 AKR1B15C9JRZ8 316 aaPredicted RBP16.19■□□□□ 0.18
VRK3-217ENST00000599538 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 NRDCO43847 1150 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 CASP14P31944 242 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 RASA3Q14644 834 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 TOGARAM2Q6ZUX3 1019 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 FCHSD1Q86WN1 690 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 REXO1L1PQ8IX06 675 aa16.19■□□□□ 0.18
VRK3-217ENST00000599538 ETNPPLQ8TBG4 499 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms