RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 PLEKHA8P1O95397 391 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 EDNRBP24530 442 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 PWP2Q15269 919 aaKnown RBP16.14■□□□□ 0.17
CLIP3-205ENST00000592017 FSCN1Q16658 493 aaKnown RBP16.14■□□□□ 0.17
CLIP3-205ENST00000592017 CXCL17Q6UXB2 119 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 CMTR1Q8N1G2 835 aaKnown RBP16.14■□□□□ 0.17
CLIP3-205ENST00000592017 VTI1AQ96AJ9 217 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 MTMR8Q96EF0 704 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 TOX2Q96NM4 488 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 MAP3K14Q99558 947 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 AP5M1Q9H0R1 490 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 RIOX1Q9H6W3 641 aa16.14■□□□□ 0.17
CLIP3-205ENST00000592017 KLF18A0A0U1RQI7 1052 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 RBM47A0AV96 593 aaKnown RBP16.13■□□□□ 0.17
CLIP3-205ENST00000592017 CASTP20810 708 aaKnown RBP16.13■□□□□ 0.17
CLIP3-205ENST00000592017 GNAQP50148 359 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 DUSP28Q4G0W2 176 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 SGMS1Q86VZ5 419 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 MCF2L2Q86YR7 1114 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 SYTL5Q8TDW5 730 aaPredicted RBP16.13■□□□□ 0.17
CLIP3-205ENST00000592017 WDR11Q9BZH6 1224 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 TMEM39AQ9NV64 488 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 COL20A1Q9P218 1284 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 Q9Y3F1 56 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 PCDHA1Q9Y5I3 950 aa16.13■□□□□ 0.17
CLIP3-205ENST00000592017 LAMA2P24043 3122 aaKnown RBP16.12■□□□□ 0.17
CLIP3-205ENST00000592017 DCDC2CA8MYV0 355 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 ARVCFO00192 962 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 ZBTB43O43298 467 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 CFBP00751 764 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 PSMA5P28066 241 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 EPHB4P54760 987 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 SHHQ15465 462 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 C9orf50Q5SZB4 431 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 APOA5Q6Q788 366 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 Q6ZUG5 572 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 CCDC82Q8N4S0 544 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 DNERQ8NFT8 737 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 RRP36Q96EU6 259 aaKnown RBP16.12■□□□□ 0.17
CLIP3-205ENST00000592017 SPZ1Q9BXG8 430 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 USP26Q9BXU7 913 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 SEC63Q9UGP8 760 aaKnown RBP16.12■□□□□ 0.17
CLIP3-205ENST00000592017 TBX21Q9UL17 535 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 BRPF3Q9ULD4 1205 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 GRIN2DO15399 1336 aa16.12■□□□□ 0.17
CLIP3-205ENST00000592017 PNMA6FA0A0J9YX94 578 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 A0A0U1RQG5 324 aaPredicted RBP16.11■□□□□ 0.17
CLIP3-205ENST00000592017 GOLGA8AA7E2F4 631 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 GOLGA8BA8MQT2 603 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 OPLAHO14841 1288 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 EPB41L2O43491 1005 aaKnown RBP16.11■□□□□ 0.17
CLIP3-205ENST00000592017 RPS6KB1P23443 525 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 PDE4DQ08499 809 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 RTN1Q16799 776 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 SRBD1Q8N5C6 995 aaKnown RBP16.11■□□□□ 0.17
CLIP3-205ENST00000592017 FANCBQ8NB91 859 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 SLC43A3Q8NBI5 491 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 BRF1Q92994 677 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 TAAR1Q96RJ0 339 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 MPHOSPH6Q99547 160 aaKnown RBP16.11■□□□□ 0.17
CLIP3-205ENST00000592017 LZTS2Q9BRK4 669 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 MCM3APO60318 1980 aa16.11■□□□□ 0.17
CLIP3-205ENST00000592017 hCG_1642624A0A1W2PR95 340 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 RAG1P15918 1043 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 APOBRQ0VD83 1088 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 TRAF1Q13077 416 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 GPR153Q6NV75 609 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 TMTC3Q6ZXV5 915 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 FAM126BQ8IXS8 530 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 MAF1Q9H063 256 aa16.1■□□□□ 0.17
CLIP3-205ENST00000592017 CABYRO75952 493 aa16.09■□□□□ 0.17
CLIP3-205ENST00000592017 HOXA13P31271 388 aaPredicted RBP16.09■□□□□ 0.17
CLIP3-205ENST00000592017 Q7L0L9 218 aa16.09■□□□□ 0.17
CLIP3-205ENST00000592017 COPS5Q92905 334 aa16.09■□□□□ 0.17
CLIP3-205ENST00000592017 RBM28Q9NW13 759 aaKnown RBP16.09■□□□□ 0.17
CLIP3-205ENST00000592017 B4DLN1 442 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 ZEB2O60315 1214 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 ARIH2O95376 493 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 TIMP1P01033 207 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 CD4P01730 458 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 EIF2AK2P19525 551 aaKnown RBP16.08■□□□□ 0.16
CLIP3-205ENST00000592017 SMARCA1P28370 1054 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 METAP2P50579 478 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLIP3-205ENST00000592017 MRPL12P52815 198 aaKnown RBP16.08■□□□□ 0.16
CLIP3-205ENST00000592017 PSMC6P62333 389 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 ITGA7Q13683 1181 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 CCDC62Q6P9F0 684 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 DEFB123Q8N688 67 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 NSUN6Q8TEA1 469 aaKnown RBP16.08■□□□□ 0.16
CLIP3-205ENST00000592017 SCFD2Q8WU76 684 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 RMDN3Q96TC7 470 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 UPF3BQ9BZI7 483 aaKnown RBP16.08■□□□□ 0.16
CLIP3-205ENST00000592017 CYP46A1Q9Y6A2 500 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 MROH7Q68CQ1 1323 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 LRRC37A2A6NM11 1700 aa16.08■□□□□ 0.16
CLIP3-205ENST00000592017 LCTP09848 1927 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 GCOM1H8Y6P7 765 aaPredicted RBP16.07■□□□□ 0.16
CLIP3-205ENST00000592017 POLR2MP0CAP2 368 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 HSD17B4P51659 736 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 GHRHRQ02643 423 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms