RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GJA8P48165 433 aa7.77□□□□□ -1.17
VPS13C-208ENST00000559119 CARFQ8N187 725 aa7.77□□□□□ -1.17
VPS13C-208ENST00000559119 APBA2Q99767 749 aa7.77□□□□□ -1.17
VPS13C-208ENST00000559119 CLEC1BQ9P126 229 aa7.77□□□□□ -1.17
VPS13C-208ENST00000559119 NTRK1P04629 796 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 NAT2P11245 290 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 CASP7P55210 303 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 GJA9P57773 515 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 DLX2Q07687 328 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-208ENST00000559119 POMZP3Q6PJE2 187 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 FERMT3Q86UX7 667 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 ZBTB8AQ96BR9 441 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 NTMQ9P121 344 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 APEX2Q9UBZ4 518 aa7.76□□□□□ -1.17
VPS13C-208ENST00000559119 NOP56O00567 594 aaKnown RBP7.75□□□□□ -1.17
VPS13C-208ENST00000559119 SARSP49591 514 aaKnown RBP7.75□□□□□ -1.17
VPS13C-208ENST00000559119 HDLBPQ00341 1268 aaKnown RBP7.75□□□□□ -1.17
VPS13C-208ENST00000559119 NFKB2Q00653 900 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 SCRN1Q12765 414 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 C9orf131Q5VYM1 1079 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 TTLL7Q6ZT98 887 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 BVESQ8NE79 360 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 SEC16BQ96JE7 1060 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 NOX5Q96PH1 765 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 EMC9Q9Y3B6 208 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 SIT1Q9Y3P8 196 aa7.75□□□□□ -1.17
VPS13C-208ENST00000559119 SMARCA5O60264 1052 aaPredicted RBP7.74□□□□□ -1.17
VPS13C-208ENST00000559119 PLS3P13797 630 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 EFEMP1Q12805 493 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 DCP2Q8IU60 420 aaKnown RBP7.74□□□□□ -1.17
VPS13C-208ENST00000559119 PPP1R14AQ96A00 147 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 DDX11Q96FC9 970 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 MMP19Q99542 508 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 AP5M1Q9H0R1 490 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 GPRC5CQ9NQ84 441 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 MARCH2Q9P0N8 246 aa7.74□□□□□ -1.17
VPS13C-208ENST00000559119 K7ESM1 405 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 NOBOXO60393 691 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 CYP2C8P10632 490 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 ZNF143P52747 638 aaPredicted RBP7.73□□□□□ -1.17
VPS13C-208ENST00000559119 KRTAP10-2P60368 255 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 ZNF513Q8N8E2 541 aaPredicted RBP7.73□□□□□ -1.17
VPS13C-208ENST00000559119 DDX1Q92499 740 aaKnown RBP7.73□□□□□ -1.17
VPS13C-208ENST00000559119 COPS5Q92905 334 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 BTG4Q9NY30 223 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 CNOT11Q9UKZ1 510 aaKnown RBP7.73□□□□□ -1.17
VPS13C-208ENST00000559119 STRIP2Q9ULQ0 834 aa7.73□□□□□ -1.17
VPS13C-208ENST00000559119 CNR2P34972 360 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 SMAD4Q13485 552 aaKnown RBP7.72□□□□□ -1.17
VPS13C-208ENST00000559119 NCAPHQ15003 741 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 GGNQ86UU5 652 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 PLEKHO2Q8TD55 490 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 ANAPC16Q96DE5 110 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 MRRFQ96E11 262 aaKnown RBP7.72□□□□□ -1.17
VPS13C-208ENST00000559119 PCDH18Q9HCL0 1135 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 SPATA6Q9NWH7 488 aaPredicted RBP7.72□□□□□ -1.17
VPS13C-208ENST00000559119 PALD1Q9ULE6 856 aa7.72□□□□□ -1.17
VPS13C-208ENST00000559119 THBDP07204 575 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 MBLAC2Q68D91 279 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 GTF2IRD2BQ6EKJ0 949 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 ETV3LQ6ZN32 361 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 GTF2IRD2Q86UP8 949 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 FAM169BQ8N8A8 192 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 LNPKQ9C0E8 428 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 INPP5FQ9Y2H2 1132 aa7.71□□□□□ -1.18
VPS13C-208ENST00000559119 C8BP07358 591 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 ZNF827Q17R98 1081 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 ZNF761Q86XN6 746 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-208ENST00000559119 TEX2Q8IWB9 1127 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 TRIM59Q8IWR1 403 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 DPF3Q92784 378 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 CYP26B1Q9NR63 512 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 DUSP10Q9Y6W6 482 aa7.7□□□□□ -1.18
VPS13C-208ENST00000559119 C22orf46C9J442 243 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 ZXDCQ2QGD7 858 aaPredicted RBP7.69□□□□□ -1.18
VPS13C-208ENST00000559119 IQCEQ6IPM2 695 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 HHIPL2Q6UWX4 724 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 CD300LDQ6UXZ3 194 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 LINC00482Q8N8I6 264 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 ADAMTS17Q8TE56 1095 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 SEC14L1Q92503 715 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 GORASP1Q9BQQ3 440 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 C11orf84Q9BUA3 381 aaPredicted RBP7.69□□□□□ -1.18
VPS13C-208ENST00000559119 TGIF2Q9GZN2 237 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 ACBD3Q9H3P7 528 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 CCSER2Q9H7U1 834 aa7.69□□□□□ -1.18
VPS13C-208ENST00000559119 SGSM2O43147 1006 aa7.68□□□□□ -1.18
VPS13C-208ENST00000559119 RPL11P62913 178 aaKnown RBP7.68□□□□□ -1.18
VPS13C-208ENST00000559119 INF2Q27J81 1249 aa7.68□□□□□ -1.18
VPS13C-208ENST00000559119 ZC3H18Q86VM9 953 aaKnown RBP7.68□□□□□ -1.18
VPS13C-208ENST00000559119 GPR20Q99678 358 aa7.68□□□□□ -1.18
VPS13C-208ENST00000559119 NKX2-4Q9H2Z4 354 aa7.68□□□□□ -1.18
VPS13C-208ENST00000559119 KYQ8NBH2 561 aa7.67□□□□□ -1.18
VPS13C-208ENST00000559119 FRS2Q8WU20 508 aa7.67□□□□□ -1.18
VPS13C-208ENST00000559119 MRGPRX3Q96LB0 322 aa7.67□□□□□ -1.18
VPS13C-208ENST00000559119 TIMM13Q9Y5L4 95 aaPredicted RBP7.67□□□□□ -1.18
VPS13C-208ENST00000559119 THBS2P35442 1172 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 MROH9Q5TGP6 573 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 MILR1Q7Z6M3 343 aa7.66□□□□□ -1.18
VPS13C-208ENST00000559119 MIB1Q86YT6 1006 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms