RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, human

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88C-206	ENST00000553437	TLK2	Q86UE8	772 aa		11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SRBD1	Q8N5C6	995 aa	Known RBP	11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	PCSK9	Q8NBP7	692 aa	Known RBP	11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CTCFL	Q8NI51	663 aa	Predicted RBP	11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	NSUN6	Q8TEA1	469 aa	Known RBP	11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	RMDN3	Q96TC7	470 aa		11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	LZTS2	Q9BRK4	669 aa		11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SPZ1	Q9BXG8	430 aa		11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	WDR11	Q9BZH6	1224 aa		11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	ALPK3	Q96L96	1907 aa		11.92	□□□□□ -0.5
CCDC88C-206	ENST00000553437	ELP1	O95163	1332 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	TRIM43B	A6NCK2	446 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	ARIH2	O95376	493 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CFB	P00751	764 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CALM1	P0DP23	149 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CALM2	P0DP24	149 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CALM3	P0DP25	149 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	GNAQ	P50148	359 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CDK7	P50613	346 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	KRT32	Q14532	448 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	FSCN1	Q16658	493 aa	Known RBP	11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CCDC62	Q6P9F0	684 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	ANKRD33	Q7Z3H0	272 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SH3RF1	Q7Z6J0	888 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	RAB11FIP4	Q86YS3	637 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SAMD3	Q8N6K7	520 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	FANCB	Q8NB91	859 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	TCEANC2	Q96MN5	208 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	IWS1	Q96ST2	819 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	MPHOSPH6	Q99547	160 aa	Known RBP	11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	STARD7	Q9NQZ5	370 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	PDLIM7	Q9NR12	457 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	MAP3K20	Q9NYL2	800 aa	Known RBP	11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	BRPF3	Q9ULD4	1205 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SNX14	Q9Y5W7	946 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SLC12A7	Q9Y666	1083 aa		11.91	□□□□□ -0.5
CCDC88C-206	ENST00000553437	VCAN	P13611	3396 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437		A0A1W2PPC1	479 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437		B4DLN1	442 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	HOXA13	P31271	388 aa	Predicted RBP	11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	MRPL12	P52815	198 aa	Known RBP	11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	MDM2	Q00987	491 aa	Predicted RBP	11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	FAAP100	Q0VG06	881 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	TRAF1	Q13077	416 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	CMTR1	Q8N1G2	835 aa	Known RBP	11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	SCFD2	Q8WU76	684 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	PIBF1	Q8WXW3	757 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	GLT1D1	Q96MS3	346 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	TOX2	Q96NM4	488 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	AP5M1	Q9H0R1	490 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	PXMP2	Q9NR77	195 aa		11.9	□□□□□ -0.5
CCDC88C-206	ENST00000553437	LCT	P09848	1927 aa		11.9	□□□□□ -0.51
CCDC88C-206	ENST00000553437	GRIN2D	O15399	1336 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	GCOM1	H8Y6P7	765 aa	Predicted RBP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	ARVCF	O00192	962 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	NKRF	O15226	690 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	EPB41L2	O43491	1005 aa	Known RBP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	PQBP1	O60828	265 aa	Known RBP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	REC8	O95072	547 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	NR3C2	P08235	984 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	HMGB1	P09429	215 aa	Known RBP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	POLR2M	P0CAP2	368 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	CPA1	P15085	419 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	EIF2AK2	P19525	551 aa	Known RBP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	ITGB8	P26012	769 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	PPP2R5B	Q15173	497 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	STXBP2	Q15833	593 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	ARHGEF16	Q5VV41	709 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	APOA5	Q6Q788	366 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	CXCL17	Q6UXB2	119 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	TMTC3	Q6ZXV5	915 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	VSIG10L	Q86VR7	867 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	SLC43A3	Q8NBI5	491 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	COPS5	Q92905	334 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	RRP36	Q96EU6	259 aa	Known RBP	11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	PDCD2L	Q9BRP1	358 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437	LRRC37A2	A6NM11	1700 aa		11.89	□□□□□ -0.51
CCDC88C-206	ENST00000553437		A0A0U1RQG5	324 aa	Predicted RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	KIAA0355	O15063	1070 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	ZEB2	O60315	1214 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	EIF3J	O75822	258 aa	Known RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	CABYR	O75952	493 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	RGS20	O76081	388 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	CLTB	P09497	229 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	TXN	P10599	105 aa	Known RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	FUT2	Q10981	343 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	SEPT14	Q6ZU15	432 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	MICU3	Q86XE3	530 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	SLC17A8	Q8NDX2	589 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	IL31RA	Q8NI17	732 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	VTI1A	Q96AJ9	217 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	JAKMIP1	Q96N16	626 aa	Known RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	USP26	Q9BXU7	913 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	UBE2O	Q9C0C9	1292 aa	Known RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	PRKAG2	Q9UGJ0	569 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	GTF3C3	Q9Y5Q9	886 aa		11.88	□□□□□ -0.51
CCDC88C-206	ENST00000553437	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.88	□□□□□ -0.51

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