RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 RASSF7Q02833 373 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 PIN1Q13526 163 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-210ENST00000552045 KIZQ2M2Z5 673 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 ZBTB46Q86UZ6 589 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 PASD1Q8IV76 773 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 CCAR1Q8IX12 1150 aaKnown RBP8.24□□□□□ -1.09
LIMA1-210ENST00000552045 CHST14Q8NCH0 376 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 HOOK2Q96ED9 719 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 SSBP4Q9BWG4 385 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-210ENST00000552045 AASDHPPTQ9NRN7 309 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 SPEF1Q9Y4P9 236 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 TRBV23OR9-2A0A075B6M9 112 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 NPHP3-ACAD11A0A0J9YXS1 232 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 HMX2A2RU54 273 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 WNT9AO14904 365 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 PRKD3O94806 890 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 SOD2P04179 222 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 LSSP48449 732 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 MECP2P51608 486 aaKnown RBP8.23□□□□□ -1.09
LIMA1-210ENST00000552045 PCBP3P57721 371 aaKnown RBP8.23□□□□□ -1.09
LIMA1-210ENST00000552045 INF2Q27J81 1249 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 IQSEC1Q6DN90 963 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 ZNF765Q7L2R6 523 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 OVCH1Q7RTY7 1134 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 CHPFQ8IZ52 775 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 SHISA5Q8N114 240 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 GPR101Q96P66 508 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-210ENST00000552045 CDH19Q9H159 772 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 C7orf69Q9H7B7 122 aa8.23□□□□□ -1.09
LIMA1-210ENST00000552045 FAM170BA6NMN3 283 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 FGF10O15520 208 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-210ENST00000552045 CYP27A1Q02318 531 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 ATP13A4Q4VNC1 1196 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 FAM47CQ5HY64 1035 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 MYO1HQ8N1T3 1032 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 CHTF18Q8WVB6 975 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 FBXW5Q969U6 566 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 MENTQ9BUN1 341 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 IPPKQ9H8X2 491 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 EMC7Q9NPA0 242 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 AP5S1Q9NUS5 200 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 THG1LQ9NWX6 298 aaKnown RBP8.22□□□□□ -1.09
LIMA1-210ENST00000552045 TCFL5Q9UL49 500 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 PCDHA2Q9Y5H9 948 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 TNKSO95271 1327 aa8.22□□□□□ -1.09
LIMA1-210ENST00000552045 CCDC66A2RUB6 948 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 WASH4PA8MWX3 477 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 K7ESF4 209 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 GSTA4O15217 222 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 FBXO21O94952 628 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 ATP2A2P16615 1042 aaKnown RBP8.21□□□□□ -1.1
LIMA1-210ENST00000552045 TPP2P29144 1249 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-210ENST00000552045 DNM2P50570 870 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 OCRLQ01968 901 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 NKPD1Q17RQ9 610 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 CDKAL1Q5VV42 579 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 MBLAC2Q68D91 279 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 C16orf59Q7L2K0 433 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 PTCHD1Q96NR3 888 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 RTFDC1Q9BY42 306 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-210ENST00000552045 PCGF6Q9BYE7 350 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 FOXP3Q9BZS1 431 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 SPTLC3Q9NUV7 552 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 RAXQ9Y2V3 346 aa8.21□□□□□ -1.1
LIMA1-210ENST00000552045 SSU72P8A0A1W2PR75 194 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 PTPDC1A2A3K4 754 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 FAM47E-STBD1D6RA91 191 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 PEX14O75381 377 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 ULK1O75385 1050 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 GRK2P25098 689 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 GRK3P35626 688 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 GNALP38405 381 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 OXCT1P55809 520 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 ST5P78524 1137 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 FAPQ12884 760 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 CCSAPQ6IQ19 270 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-210ENST00000552045 C11orf74Q86VG3 221 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 CAMKK2Q96RR4 588 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 CDADC1Q9BWV3 514 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 STOML1Q9UBI4 398 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 PPARGC1AQ9UBK2 798 aaKnown RBP8.2□□□□□ -1.1
LIMA1-210ENST00000552045 U3KQE9 123 aa8.2□□□□□ -1.1
LIMA1-210ENST00000552045 MYO1BO43795 1136 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 GDF11O95390 407 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 ENDOUP21128 410 aaKnown RBP8.19□□□□□ -1.1
LIMA1-210ENST00000552045 KPNA1P52294 538 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-210ENST00000552045 GAB4Q2WGN9 574 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 DUSP27Q5VZP5 1158 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 RNF111Q6ZNA4 994 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 ARHGAP27Q6ZUM4 889 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 C14orf80Q86SX3 495 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 CPNE8Q86YQ8 564 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 CERS3Q8IU89 383 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 CBARPQ8N350 705 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-210ENST00000552045 TMEM151AQ8N4L1 468 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 FBXL6Q8N531 539 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 MFSD14AQ96MC6 490 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 MKNK2Q9HBH9 465 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 ZSWIM5Q9P217 1185 aa8.19□□□□□ -1.1
LIMA1-210ENST00000552045 H3BS24 57 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms