RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 RPN1P04843 607 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 CD44P16070 742 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 RPS12P25398 132 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 ECE1P42892 770 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 R3HDM1Q15032 1099 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 DNAJC21Q5F1R6 531 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 MCTP2Q6DN12 878 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 FBXO11Q86XK2 927 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 CDAN1Q8IWY9 1227 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 MED15Q96RN5 788 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 RAB34Q9BZG1 259 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 TMX1Q9H3N1 280 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 KBTBD4Q9NVX7 518 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 PGAP2Q9UHJ9 254 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 FEZ2Q9UHY8 353 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 BCS1LQ9Y276 419 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 LTBP3Q9NS15 1303 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 PPP1R3GB7ZBB8 358 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 TNNT1P13805 278 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 PLCG1P19174 1290 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 GTF2A1P52655 376 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 ZNF280AP59817 542 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 AP3B2Q13367 1082 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 DHX8Q14562 1220 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 ZNF658Q5TYW1 1059 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 SPATA1Q5VX52 437 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 TMC6Q7Z403 805 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 ZNF513Q8N8E2 541 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 DPF2Q92785 391 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 SGIP1Q9BQI5 828 aa10.84□□□□□ -0.67
CLIP1-212ENST00000540304 DDX25Q9UHL0 483 aaKnown RBP10.84□□□□□ -0.67
CLIP1-212ENST00000540304 USP17L15C9J2P7 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L13C9JLJ4 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L11C9JVI0 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L18D6R9N7 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L22D6RA61 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L17D6RBQ6 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L19D6RCP7 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L20D6RJB6 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 CAP2P40123 477 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 MAP3K10Q02779 954 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L24Q0WX57 530 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 KLHL10Q6JEL2 608 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 USP17L6PQ6QN14 398 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 MIGA2Q7L4E1 593 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 SMYD4Q8IYR2 804 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-212ENST00000540304 SPICE1Q8N0Z3 855 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 ACER1Q8TDN7 264 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 CALML4Q96GE6 196 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 CALR3Q96L12 384 aaKnown RBP10.83□□□□□ -0.68
CLIP1-212ENST00000540304 PLIN2Q99541 437 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 MMTAG2Q9BU76 263 aaKnown RBP10.83□□□□□ -0.68
CLIP1-212ENST00000540304 SH2D4AQ9H788 454 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 LRWD1Q9UFC0 647 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 PRR12Q9ULL5 1215 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 SHTN1A0MZ66 631 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 MAFGO15525 162 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 STAT2P52630 851 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 SNAP25P60880 206 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 PDIA5Q14554 519 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 KCNB1Q14721 858 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 CCDC150Q8NCX0 1101 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 ANO3Q9BYT9 981 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 TSPYL1Q9H0U9 437 aa10.83□□□□□ -0.68
CLIP1-212ENST00000540304 MEIS2O14770 477 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 COBLO75128 1261 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 USP11P51784 963 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 TRAF1Q13077 416 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 TNFAIP1Q13829 316 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 USH1GQ495M9 461 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 LRRC15Q8TF66 581 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 VCPKMTQ9H867 229 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 SCAF8Q9UPN6 1271 aaKnown RBP10.82□□□□□ -0.68
CLIP1-212ENST00000540304 CTNND2Q9UQB3 1225 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 ASNSP08243 561 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 TNNT3P45378 269 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-212ENST00000540304 RASA3Q14644 834 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 KIAA1755Q5JYT7 1200 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 FAM83BQ5T0W9 1011 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 SAMSN1Q9NSI8 373 aaKnown RBP10.82□□□□□ -0.68
CLIP1-212ENST00000540304 STK17AQ9UEE5 414 aa10.82□□□□□ -0.68
CLIP1-212ENST00000540304 FOSP01100 380 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-212ENST00000540304 TAL1P17542 331 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-212ENST00000540304 NOP2P46087 812 aaKnown RBP10.81□□□□□ -0.68
CLIP1-212ENST00000540304 STX17P56962 302 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 AMPD3Q01432 767 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 PAK1Q13153 545 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 MOXD1Q6UVY6 613 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 VSTM4Q8IW00 320 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 HAS1Q92839 578 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 UIMC1Q96RL1 719 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 RWDD2AQ9UIY3 292 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CYP3A7-CYP3A51PA0A087WV96 503 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 POTEMA6NI47 508 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 KLRC4O43908 158 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 MARCH6O60337 910 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 RHOBTB3O94955 611 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 SKILP12757 684 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CYP3A7P24462 503 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 GMPSP49915 693 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms