RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 TIMM13Q9Y5L4 95 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-210ENST00000534172 NPFFR2Q9Y5X5 522 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 ARID4BQ4LE39 1312 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-210ENST00000534172 PNLIPP16233 465 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 HK2P52789 917 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 GPR85P60893 370 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 RPL11P62913 178 aaKnown RBP4.82□□□□□ -1.64
CSMD3-210ENST00000534172 STYK1Q6J9G0 422 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 CEP128Q6ZU80 1094 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 KREMEN2Q8NCW0 462 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 ACSL6Q9UKU0 697 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 PPP1R12AO14974 1030 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-210ENST00000534172 TBX1O43435 398 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 TMEM62Q0P6H9 643 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 RALGPS1Q5JS13 557 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 CBLL1Q75N03 491 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 RPUSD2Q8IZ73 545 aaKnown RBP4.82□□□□□ -1.64
CSMD3-210ENST00000534172 ABI1Q8IZP0 508 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 ABHD4Q8TB40 342 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 CLEC1BQ9P126 229 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 PLAAQ9Y263 795 aa4.82□□□□□ -1.64
CSMD3-210ENST00000534172 H7BY64 318 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 KCNQ2O43526 872 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 NPTXRO95502 500 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 TRIM61Q5EBN2 209 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 USP53Q70EK8 1073 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 CABP7Q86V35 215 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 CERS3Q8IU89 383 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 C1orf159Q96HA4 380 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 FEZ1Q99689 392 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.81□□□□□ -1.64
CSMD3-210ENST00000534172 NUB1Q9Y5A7 615 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 A0A1W2PQJ5 194 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 B4E1Z4 1266 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 LSAMPQ13449 338 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 SQSTM1Q13501 440 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 HSF5Q4G112 596 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-210ENST00000534172 FAM209AQ5JX71 171 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 KIAA0907Q7Z7F0 614 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-210ENST00000534172 TMEM52Q8NDY8 209 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 KIRREL1Q96J84 757 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 SLC6A17Q9H1V8 727 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 FAM53CQ9NYF3 392 aa4.81□□□□□ -1.64
CSMD3-210ENST00000534172 SCRIBQ14160 1630 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 CHD1O14646 1710 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 ABLIM1O14639 778 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 ADAMTS4O75173 837 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 FLT3P36888 993 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 IRAK1P51617 712 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 GYS2P54840 703 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 AMPD3Q01432 767 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 CHRNA2Q15822 529 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 KIZQ2M2Z5 673 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 OLFML2BQ68BL8 750 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 EXOC2Q96KP1 924 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 ALG1Q9BT22 464 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 GPRC5CQ9NQ84 441 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 PDLIM7Q9NR12 457 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 GSTA4O15217 222 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 PARNO95453 639 aaKnown RBP4.8□□□□□ -1.64
CSMD3-210ENST00000534172 GRIA2P42262 883 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 NLRX1Q86UT6 975 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 NCOA5Q9HCD5 579 aaKnown RBP4.8□□□□□ -1.64
CSMD3-210ENST00000534172 SFMBT1Q9UHJ3 866 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 NUDT5Q9UKK9 219 aa4.8□□□□□ -1.64
CSMD3-210ENST00000534172 COA3Q9Y2R0 106 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-210ENST00000534172 OAS3Q9Y6K5 1087 aaKnown RBP4.8□□□□□ -1.64
CSMD3-210ENST00000534172 ASMTLO95671 621 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 CYP4F8P98187 520 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 NR1I3Q14994 352 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 JMJD8Q96S16 334 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 LGR4Q9BXB1 951 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 PRDM7Q9NQW5 492 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 INTS7Q9NVH2 962 aaKnown RBP4.79□□□□□ -1.64
CSMD3-210ENST00000534172 GPR160Q9UJ42 338 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 ADAMTS6Q9UKP5 1117 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 C7orf72A4D263 438 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 USP2O75604 605 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-210ENST00000534172 PLEKHG6Q3KR16 790 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 MROH9Q5TGP6 573 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 ZPBP2Q6X784 338 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 LBX2Q6XYB7 198 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 IRF2BP1Q8IU81 584 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 Q8N3U1 123 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 LZTR1Q8N653 840 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 NUP43Q8NFH3 380 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 STAG1Q8WVM7 1258 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 MAGEB10Q96LZ2 347 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-210ENST00000534172 PHF20Q9BVI0 1012 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 MAGEC2Q9UBF1 373 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-210ENST00000534172 TOP2BQ02880 1626 aa4.79□□□□□ -1.64
CSMD3-210ENST00000534172 CLASP1Q7Z460 1538 aa4.78□□□□□ -1.64
CSMD3-210ENST00000534172 HRKO00198 91 aa4.78□□□□□ -1.64
CSMD3-210ENST00000534172 GLI1P08151 1106 aa4.78□□□□□ -1.64
CSMD3-210ENST00000534172 CYP4F3Q08477 520 aa4.78□□□□□ -1.64
CSMD3-210ENST00000534172 SF1Q15637 639 aaKnown RBP4.78□□□□□ -1.64
CSMD3-210ENST00000534172 TKFCQ3LXA3 575 aa4.78□□□□□ -1.64
CSMD3-210ENST00000534172 YOD1Q5VVQ6 348 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-210ENST00000534172 FOXB2Q5VYV0 432 aa4.78□□□□□ -1.64
CSMD3-210ENST00000534172 RIOX2Q8IUF8 465 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms