RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NACC1Q96RE7 527 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 MTMR6Q9Y217 621 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 CLIC4Q9Y696 253 aa14.37□□□□□ -0.11
PTPRF-215ENST00000496447 MYCP01106 439 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 GCFC2P16383 781 aaKnown RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 MECOMQ03112 1051 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 MIPOL1Q8TD10 442 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 ZNF215Q9UL58 517 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 GBP1P32455 592 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 NSFP46459 744 aaKnown RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 MTMR3Q13615 1198 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 CLEC4GQ6UXB4 293 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 PALM2Q8IXS6 379 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 DYNLL2Q96FJ2 89 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 CEP170P1Q96L14 293 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 FOXP1Q9H334 677 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 SOS2Q07890 1332 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 PTPREP23469 700 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 TSNAXIP1Q2TAA8 658 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 EFCAB13Q8IY85 973 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 FBXO18Q8NFZ0 1043 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 NLRP7Q8WX94 980 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 GAP43P17677 238 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 RIC8AQ9NPQ8 531 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 RNF8O76064 485 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 SLC8A1P32418 973 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 SDCCAG8Q86SQ7 713 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-215ENST00000496447 FAM160B2Q86V87 743 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 GRK7Q8WTQ7 553 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 CUEDC2Q9H467 287 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 PNMA3Q9UL41 463 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 TACC3Q9Y6A5 838 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 SPATA31A3Q5VYP0 1347 aa14.36□□□□□ -0.11
PTPRF-215ENST00000496447 MBD5Q9P267 1494 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 PLCB4Q15147 1175 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 TRIM58Q8NG06 486 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 TBCKQ8TEA7 893 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 COA7Q96BR5 231 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 NT5C1BQ96P26 610 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 KRT12Q99456 494 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 RIPOR2Q9Y4F9 1068 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 NOL3O60936 208 aaKnown RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 MFAP3P55082 362 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 PTK2Q05397 1052 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 PPFIA1Q13136 1202 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 CACNA2D3Q8IZS8 1091 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 JRKLQ9Y4A0 524 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 KCNK3O14649 394 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 CYP21A2P08686 494 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 EXOC3L4Q17RC7 722 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 ZNF589Q86UQ0 364 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 FOXP4Q8IVH2 680 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 CACYBPQ9HB71 228 aaKnown RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 PCDHB4Q9Y5E5 795 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 TBC1D10BQ4KMP7 808 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 CEP85LQ5SZL2 805 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 KIAA1841Q6NSI8 718 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 C4orf50Q6ZRC1 276 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 RSRC2Q7L4I2 434 aaKnown RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 PRPF31Q8WWY3 499 aaKnown RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 P3H4Q92791 437 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 AK8Q96MA6 479 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 ACCSQ96QU6 501 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 TYW5A2RUC4 315 aaKnown RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 BPIFB4P59827 614 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 DENND2CQ68D51 928 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 USP17L2Q6R6M4 530 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 PUS7LQ9H0K6 701 aaKnown RBP14.35□□□□□ -0.11
PTPRF-215ENST00000496447 SNX25Q9H3E2 840 aa14.35□□□□□ -0.11
PTPRF-215ENST00000496447 A6NJR5 290 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 GKAP1Q5VSY0 366 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-215ENST00000496447 C2orf69Q8N8R5 385 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 PLCB1Q9NQ66 1216 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 HECW2Q9P2P5 1572 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 NDUFA8P51970 172 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 ZNF341Q9BYN7 854 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 MAGI3Q5TCQ9 1506 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 CSPG5O95196 566 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 ADCY8P40145 1251 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 CDC37Q16543 378 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-215ENST00000496447 SAR1BQ9Y6B6 198 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 RGS12O14924 1447 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 PFDN6O15212 129 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 BUB1O43683 1085 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 SPATA1Q5VX52 437 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 PLEKHA4Q9H4M7 779 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 CAPN7Q9Y6W3 813 aa14.34□□□□□ -0.11
PTPRF-215ENST00000496447 PTPN12Q05209 780 aaKnown RBP14.33□□□□□ -0.11
PTPRF-215ENST00000496447 RASGRF1Q13972 1273 aa14.33□□□□□ -0.11
PTPRF-215ENST00000496447 ADCK5Q3MIX3 580 aa14.33□□□□□ -0.11
PTPRF-215ENST00000496447 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.33□□□□□ -0.11
PTPRF-215ENST00000496447 CACTINQ8WUQ7 758 aaKnown RBP14.33□□□□□ -0.11
PTPRF-215ENST00000496447 TMEM63CQ9P1W3 806 aa14.33□□□□□ -0.11
PTPRF-215ENST00000496447 KRIT1O00522 736 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 MTERF2Q49AM1 385 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 TTLL11Q8NHH1 800 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 EPSTI1Q96J88 318 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 PSAPP07602 524 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 H2AFZP0C0S5 128 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 NR2F2P24468 414 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms