RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 IWS1Q96ST2 819 aa26.32■■□□□ 1.8
PTPN4-211ENST00000488279 RMDN3Q96TC7 470 aa26.32■■□□□ 1.8
PTPN4-211ENST00000488279 MTG1Q9BT17 334 aaPredicted RBP26.32■■□□□ 1.8
PTPN4-211ENST00000488279 AMNQ9BXJ7 453 aa26.32■■□□□ 1.8
PTPN4-211ENST00000488279 MAD2L2Q9UI95 211 aa26.32■■□□□ 1.8
PTPN4-211ENST00000488279 IFIT3O14879 490 aaKnown RBP26.31■■□□□ 1.8
PTPN4-211ENST00000488279 KPNA6O60684 536 aa26.31■■□□□ 1.8
PTPN4-211ENST00000488279 CDX2Q99626 313 aaPredicted RBP26.31■■□□□ 1.8
PTPN4-211ENST00000488279 ALDH8A1Q9H2A2 487 aaPredicted RBP26.31■■□□□ 1.8
PTPN4-211ENST00000488279 COL20A1Q9P218 1284 aa26.31■■□□□ 1.8
PTPN4-211ENST00000488279 PALM3A6NDB9 673 aaPredicted RBP26.3■■□□□ 1.8
PTPN4-211ENST00000488279 A6NJR5 290 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 E7EWF7 191 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 ACRP10323 421 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 SART3Q15020 963 aaKnown RBP26.3■■□□□ 1.8
PTPN4-211ENST00000488279 STXBP2Q15833 593 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 PSRC1Q6PGN9 363 aaPredicted RBP26.3■■□□□ 1.8
PTPN4-211ENST00000488279 NCOA7Q8NI08 942 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 COPS5Q92905 334 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 IL23AQ9NPF7 189 aa26.3■■□□□ 1.8
PTPN4-211ENST00000488279 ZBTB5O15062 677 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 SUPT20HL2P0C7V6 817 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 ARHGEF16Q5VV41 709 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 SEPT14Q6ZU15 432 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 ZNF365Q70YC5 407 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 MAP4K1Q92918 833 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 MTMR8Q96EF0 704 aa26.29■■□□□ 1.8
PTPN4-211ENST00000488279 NOC4LQ9BVI4 516 aaKnown RBP26.29■■□□□ 1.8
PTPN4-211ENST00000488279 TTYH1Q9H313 450 aaPredicted RBP26.29■■□□□ 1.8
PTPN4-211ENST00000488279 TMEM265A0A087WTH1 108 aa26.28■■□□□ 1.8
PTPN4-211ENST00000488279 CFBP00751 764 aa26.28■■□□□ 1.8
PTPN4-211ENST00000488279 WTAPQ15007 396 aa26.28■■□□□ 1.8
PTPN4-211ENST00000488279 CCDC62Q6P9F0 684 aa26.28■■□□□ 1.8
PTPN4-211ENST00000488279 PCDHA1Q9Y5I3 950 aa26.28■■□□□ 1.8
PTPN4-211ENST00000488279 ARIH2O95376 493 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 CCL23P55773 120 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 TRAF1Q13077 416 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 GRM4Q14833 912 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 TRMT13Q9NUP7 481 aaKnown RBP26.27■■□□□ 1.8
PTPN4-211ENST00000488279 MAP3K20Q9NYL2 800 aaKnown RBP26.27■■□□□ 1.8
PTPN4-211ENST00000488279 TAF6LQ9Y6J9 622 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 UMODL1Q5DID0 1318 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 EYSQ5T1H1 3165 aa26.27■■□□□ 1.8
PTPN4-211ENST00000488279 UNC80Q8N2C7 3258 aa26.26■■□□□ 1.79
PTPN4-211ENST00000488279 EIF3JO75822 258 aaKnown RBP26.26■■□□□ 1.79
PTPN4-211ENST00000488279 FGBP02675 491 aa26.26■■□□□ 1.79
PTPN4-211ENST00000488279 NBPF20Q3BBV1 942 aa26.26■■□□□ 1.79
PTPN4-211ENST00000488279 RASIP1Q5U651 963 aa26.26■■□□□ 1.79
PTPN4-211ENST00000488279 CHST3Q7LGC8 479 aa26.26■■□□□ 1.79
PTPN4-211ENST00000488279 PPP1R11O60927 126 aaPredicted RBP26.25■■□□□ 1.79
PTPN4-211ENST00000488279 EIF2AK2P19525 551 aaKnown RBP26.25■■□□□ 1.79
PTPN4-211ENST00000488279 DNAJB2P25686 324 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 HSD17B4P51659 736 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 LY6KQ17RY6 165 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 FAM47CQ5HY64 1035 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 TMEM67Q5HYA8 995 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 NFRKBQ6P4R8 1299 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 CATIPQ7Z7H3 387 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 RPUSD2Q8IZ73 545 aaKnown RBP26.25■■□□□ 1.79
PTPN4-211ENST00000488279 HERVK_113Q902F9 699 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 MTIF3Q9H2K0 278 aaKnown RBP26.25■■□□□ 1.79
PTPN4-211ENST00000488279 RIOX1Q9H6W3 641 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 SENP2Q9HC62 589 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 PXMP2Q9NR77 195 aa26.25■■□□□ 1.79
PTPN4-211ENST00000488279 CDH23Q9H251 3354 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 OPLAHO14841 1288 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 GH1P01241 217 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 NR3C2P08235 984 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 TROAPQ12815 778 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 STOX1Q6ZVD7 989 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 HOMER1Q86YM7 354 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 SAMD3Q8N6K7 520 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 WNT8AQ9H1J5 351 aa26.24■■□□□ 1.79
PTPN4-211ENST00000488279 RBM8AQ9Y5S9 174 aaKnown RBP26.24■■□□□ 1.79
PTPN4-211ENST00000488279 CYP2C9P11712 490 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 GHRHRQ02643 423 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 IGDCC4Q8TDY8 1250 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 AFG1LQ8WV93 481 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 MYLIPQ8WY64 445 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 TIFAQ96CG3 184 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 PIGSQ96S52 555 aa26.23■■□□□ 1.79
PTPN4-211ENST00000488279 DLL1O00548 723 aa26.22■■□□□ 1.79
PTPN4-211ENST00000488279 PTPN11Q06124 597 aaPredicted RBP26.22■■□□□ 1.79
PTPN4-211ENST00000488279 ARHGAP1Q07960 439 aa26.22■■□□□ 1.79
PTPN4-211ENST00000488279 DDX41Q9UJV9 622 aaKnown RBP26.22■■□□□ 1.79
PTPN4-211ENST00000488279 PNMA6FA0A0J9YX94 578 aa26.21■■□□□ 1.79
PTPN4-211ENST00000488279 GRXCR1A8MXD5 290 aa26.21■■□□□ 1.79
PTPN4-211ENST00000488279 SLC35G1Q2M3R5 365 aa26.21■■□□□ 1.79
PTPN4-211ENST00000488279 OTOP2Q7RTS6 562 aa26.21■■□□□ 1.79
PTPN4-211ENST00000488279 MB21D2Q8IYB1 491 aaPredicted RBP26.21■■□□□ 1.79
PTPN4-211ENST00000488279 ZNF576Q9H609 170 aa26.21■■□□□ 1.79
PTPN4-211ENST00000488279 MRVI1Q9Y6F6 885 aa26.21■■□□□ 1.79
PTPN4-211ENST00000488279 PRUNE2Q8WUY3 3088 aa26.2■■□□□ 1.79
PTPN4-211ENST00000488279 GCOM1H8Y6P7 765 aaPredicted RBP26.2■■□□□ 1.78
PTPN4-211ENST00000488279 CYTH3O43739 400 aa26.2■■□□□ 1.78
PTPN4-211ENST00000488279 MMP3P08254 477 aa26.2■■□□□ 1.78
PTPN4-211ENST00000488279 POLR2MP0CAP2 368 aa26.2■■□□□ 1.78
PTPN4-211ENST00000488279 CASTP20810 708 aaKnown RBP26.2■■□□□ 1.78
PTPN4-211ENST00000488279 HOXA13P31271 388 aaPredicted RBP26.2■■□□□ 1.78
PTPN4-211ENST00000488279 ANTXR2P58335 489 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms