RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 WIPI1Q5MNZ9 446 aaPredicted RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 RNF219Q5W0B1 726 aaPredicted RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 SLC4A10Q6U841 1118 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 ARHGAP27Q6ZUM4 889 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 CYFIP1Q7L576 1253 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 ATG4DQ86TL0 474 aaPredicted RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 LRRTM3Q86VH5 581 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 SUGP1Q8IWZ8 645 aaKnown RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 NETO1Q8TDF5 533 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 GPBAR1Q8TDU6 330 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 BCL7CQ8WUZ0 217 aaPredicted RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 DDX1Q92499 740 aaKnown RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 RPGRQ92834 1020 aaKnown RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 CDHR1Q96JP9 859 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 EXOC2Q96KP1 924 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 CDC6Q99741 560 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 ATXN3LQ9H3M9 355 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 GSX1Q9H4S2 264 aaPredicted RBP5.35□□□□□ -1.55
RTN4-213ENST00000485749 FAM105AQ9NUU6 356 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 SPEF1Q9Y4P9 236 aa5.35□□□□□ -1.55
RTN4-213ENST00000485749 TRBV23-1A0A0A0MS06 115 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 A0A1W2PQU0 124 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 A0A1W2PRQ8 180 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 ANKRD34BA5PLL1 514 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 RPN1P04843 607 aaKnown RBP5.34□□□□□ -1.55
RTN4-213ENST00000485749 CLK1P49759 484 aaKnown RBP5.34□□□□□ -1.55
RTN4-213ENST00000485749 MCL1Q07820 350 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 PDE1CQ14123 709 aaPredicted RBP5.34□□□□□ -1.55
RTN4-213ENST00000485749 DCTN1Q14203 1278 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 ZNF792Q3KQV3 632 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 HSP90B2PQ58FF3 399 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 TRIM61Q5EBN2 209 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 MPRIPQ6WCQ1 1025 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 NFXL1Q6ZNB6 911 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 E2F7Q96AV8 911 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 PLPPR2Q96GM1 343 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 GPR101Q96P66 508 aaPredicted RBP5.34□□□□□ -1.55
RTN4-213ENST00000485749 SELENOOQ9BVL4 669 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 TARS2Q9BW92 718 aaKnown RBP5.34□□□□□ -1.55
RTN4-213ENST00000485749 KRTAP4-7Q9BYR0 210 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 SUDS3Q9H7L9 328 aaPredicted RBP5.34□□□□□ -1.55
RTN4-213ENST00000485749 MKNK2Q9HBH9 465 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 ARHGEF4Q9NR80 690 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 CLIC5Q9NZA1 410 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 VAV3Q9UKW4 847 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 TMCC3Q9ULS5 477 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 GTF2A1LQ9UNN4 478 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 PPP2R3BQ9Y5P8 575 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 CORINQ9Y5Q5 1042 aa5.34□□□□□ -1.55
RTN4-213ENST00000485749 FAM170AA1A519 330 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 DBX1A6NMT0 343 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 ORC4O43929 436 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 BRINP1O60477 761 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 AOC2O75106 756 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 RAPGEF3O95398 923 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 PAPLNO95428 1278 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 HNRNPCP07910 306 aaKnown RBP eCLIP5.33□□□□□ -1.56
RTN4-213ENST00000485749 IFIT2P09913 472 aaKnown RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 FGFR1P11362 822 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 L1CAMP32004 1257 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 NAP1L1P55209 391 aaKnown RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 SUMO1P63165 101 aaKnown RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 SIM2Q14190 667 aaPredicted RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 INPP5AQ14642 412 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 TOMM20Q15388 145 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 DHCR24Q15392 516 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 ACBD5Q5T8D3 534 aaPredicted RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 FOXB2Q5VYV0 432 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 KLHL10Q6JEL2 608 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 LRFN4Q6PJG9 635 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 SKAP1Q86WV1 359 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 ZNF354CQ86Y25 554 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 KSR1Q8IVT5 923 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 RAVER1Q8IY67 606 aaKnown RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 SHISA5Q8N114 240 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 KIAA1958Q8N8K9 716 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 PPHLN1Q8NEY8 458 aaKnown RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 SMARCC1Q92922 1105 aaPredicted RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 ACSBG1Q96GR2 724 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 SLC39A13Q96H72 371 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 CLUHP3Q96NS8 147 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 IWS1Q96ST2 819 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 AARSD1Q9BTE6 412 aaKnown RBP5.33□□□□□ -1.56
RTN4-213ENST00000485749 ASPSCR1Q9BZE9 553 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 CHST12Q9NRB3 414 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 SMC3Q9UQE7 1217 aa5.33□□□□□ -1.56
RTN4-213ENST00000485749 PRRT4C9JH25 899 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 CAPNS1P04632 268 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 CDK8P49336 464 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 NEK2P51955 445 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 PMS1P54277 932 aaKnown RBP5.32□□□□□ -1.56
RTN4-213ENST00000485749 SV2CQ496J9 727 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 FAM209AQ5JX71 171 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 ANO1Q5XXA6 986 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 SEZ6L2Q6UXD5 910 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 CATIPQ7Z7H3 387 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 SLFN12Q8IYM2 578 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 UBR7Q8N806 425 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 ELMO3Q96BJ8 720 aa5.32□□□□□ -1.56
RTN4-213ENST00000485749 RC3H2Q9HBD1 1191 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms