RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MLXIPQ9HAP2 919 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 TSKSQ9UJT2 592 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 PLAGL2Q9UPG8 496 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 DLEC1Q9Y238 1755 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 LSP1P33241 339 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 ATP1A2P50993 1020 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 KIF11P52732 1056 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 PAK2Q13177 524 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 NAALADL2Q58DX5 795 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 KRT26Q7Z3Y9 468 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 SDR42E1Q8WUS8 393 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 MAGEF1Q9HAY2 307 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 RNF14Q9UBS8 474 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 BTAF1O14981 1849 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 STARD3NLO95772 234 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 CYP7A1P22680 504 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 UBA7P41226 1012 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 NAP1L1P55209 391 aaKnown RBP14.74□□□□□ -0.05
USP40-214ENST00000483519 HLFQ16534 295 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 EMC10Q5UCC4 262 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 TYW1BQ6NUM6 668 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 C4orf32Q8N8J7 132 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 KBTBD4Q9NVX7 518 aa14.74□□□□□ -0.05
USP40-214ENST00000483519 TNS1Q9HBL0 1735 aaKnown RBP14.74□□□□□ -0.05
USP40-214ENST00000483519 LCA5LO95447 670 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 PFKFB3Q16875 520 aaPredicted RBP14.73□□□□□ -0.05
USP40-214ENST00000483519 NAA35Q5VZE5 725 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 KCTD16Q68DU8 428 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 C2CD5Q86YS7 1000 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 SH2D3CQ8N5H7 860 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 CCDC43Q96MW1 224 aaKnown RBP14.73□□□□□ -0.05
USP40-214ENST00000483519 CUEDC2Q9H467 287 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 MAGEB6P1A0A0J9YX57 407 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 AKR1B10O60218 316 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 KRT14P02533 472 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 PLCB4Q15147 1175 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 CFAP221Q4G0U5 840 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 MIIPQ5JXC2 388 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 PIAS4Q8N2W9 510 aaPredicted RBP14.73□□□□□ -0.05
USP40-214ENST00000483519 SRBD1Q8N5C6 995 aaKnown RBP14.73□□□□□ -0.05
USP40-214ENST00000483519 GGA2Q9UJY4 613 aa14.73□□□□□ -0.05
USP40-214ENST00000483519 MYO1FO00160 1098 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 PPP1R37O75864 691 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 PLEKP08567 350 aaPredicted RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 CCDC172P0C7W6 258 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 NR1D1P20393 614 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 CXCR5P32302 372 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 MRPS25P82663 173 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 CD302Q8IX05 232 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 DNAJC10Q8IXB1 793 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 MREGQ8N565 214 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 C1orf131Q8NDD1 294 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 RNPC3Q96LT9 517 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 CCSER1Q9C0I3 900 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 ARHGAP20Q9P2F6 1191 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 SRRM3A6NNA2 597 aaPredicted RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 RDXP35241 583 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 CC2D2BQ6DHV5 1058 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 BLIDQ8IZY5 108 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 IQCKQ8N0W5 287 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 ZNF473Q8WTR7 871 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 PSMB7Q99436 277 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 GDF3Q9NR23 364 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 RBM12Q9NTZ6 932 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 LAMB2P55268 1798 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 EIF4A3P38919 411 aaKnown RBP14.72□□□□□ -0.05
USP40-214ENST00000483519 ANKRD40Q6AI12 368 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 PTF1AQ7RTS3 328 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 NOX5Q96PH1 765 aa14.72□□□□□ -0.05
USP40-214ENST00000483519 RGPD3A6NKT7 1758 aaPredicted RBP14.71□□□□□ -0.05
USP40-214ENST00000483519 RGPD4Q7Z3J3 1758 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 HMGB1P1B2RPK0 211 aaPredicted RBP14.71□□□□□ -0.05
USP40-214ENST00000483519 SOCS7O14512 581 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 CHUKO15111 745 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 PJA2O43164 708 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 MMP14P50281 582 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 PDE4DQ08499 809 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 PTGISQ16647 500 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 SLC27A3Q5K4L6 730 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 VCPKMTQ9H867 229 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 SMARCAL1Q9NZC9 954 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 ASAP1Q9ULH1 1129 aa14.71□□□□□ -0.05
USP40-214ENST00000483519 ZNF233A6NK53 670 aa14.71□□□□□ -0.06
USP40-214ENST00000483519 MAGEA1P43355 309 aa14.71□□□□□ -0.06
USP40-214ENST00000483519 GUCY1A3Q02108 690 aa14.71□□□□□ -0.06
USP40-214ENST00000483519 DRP2Q13474 957 aa14.71□□□□□ -0.06
USP40-214ENST00000483519 RNF10Q8N5U6 811 aaKnown RBP14.71□□□□□ -0.06
USP40-214ENST00000483519 NFU1Q9UMS0 254 aa14.71□□□□□ -0.06
USP40-214ENST00000483519 LAD1O00515 517 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 HEXIM1O94992 359 aaKnown RBP14.7□□□□□ -0.06
USP40-214ENST00000483519 BCAMP50895 628 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 CCDC178Q5BJE1 867 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 RNF187Q5TA31 235 aaPredicted RBP14.7□□□□□ -0.06
USP40-214ENST00000483519 CCDC84Q86UT8 332 aaPredicted RBP14.7□□□□□ -0.06
USP40-214ENST00000483519 WHAMMQ8TF30 809 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 EEF2KMTQ96G04 330 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 ATP6V1G3Q96LB4 118 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 JPH2Q9BR39 696 aaPredicted RBP14.7□□□□□ -0.06
USP40-214ENST00000483519 BRIP1Q9BX63 1249 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 TLR10Q9BXR5 811 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms