RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 hCG_1984214I3L0E3 225 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 CDK11BP21127 795 aaKnown RBP16.24■□□□□ 0.19
CHD3-211ENST00000481999 PRPHP41219 470 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 CCDC174Q6PII3 467 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 KCNK18Q7Z418 384 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 ZNF713Q8N859 430 aaPredicted RBP16.24■□□□□ 0.19
CHD3-211ENST00000481999 IGSF22Q8N9C0 903 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 KIFC2Q96AC6 838 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 L2HGDHQ9H9P8 463 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 DDX25Q9UHL0 483 aaKnown RBP16.24■□□□□ 0.19
CHD3-211ENST00000481999 SYNRGQ9UMZ2 1314 aa16.24■□□□□ 0.19
CHD3-211ENST00000481999 GTPBP6O43824 516 aaPredicted RBP16.23■□□□□ 0.19
CHD3-211ENST00000481999 PMS1P54277 932 aaKnown RBP16.23■□□□□ 0.19
CHD3-211ENST00000481999 GRIPAP1Q4V328 841 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 MICALL2Q8IY33 904 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 ENOX1Q8TC92 643 aaKnown RBP16.23■□□□□ 0.19
CHD3-211ENST00000481999 GMCL1Q96IK5 515 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 ZBED3Q96IU2 234 aaPredicted RBP16.23■□□□□ 0.19
CHD3-211ENST00000481999 CCSER1Q9C0I3 900 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 TMX1Q9H3N1 280 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 PRCPP42785 496 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 GMPSP49915 693 aaPredicted RBP16.23■□□□□ 0.19
CHD3-211ENST00000481999 MRPL12P52815 198 aaKnown RBP16.23■□□□□ 0.19
CHD3-211ENST00000481999 CYP2W1Q8TAV3 490 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 CCDC34Q96HJ3 373 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 CENPFP49454 3210 aa16.23■□□□□ 0.19
CHD3-211ENST00000481999 LAD1O00515 517 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 TEX33O43247 280 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 KLRC4O43908 158 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 UBXN2AP68543 259 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 GRB10Q13322 594 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 KMT5BQ4FZB7 885 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 FCHSD1Q86WN1 690 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 ANO3Q9BYT9 981 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 KBTBD4Q9NVX7 518 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 OGFRQ9NZT2 677 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 LRWD1Q9UFC0 647 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 ZNF541Q9H0D2 1346 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 STAT3P40763 770 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 SYT10Q6XYQ8 523 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 FBXO11Q86XK2 927 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 ZNF397Q8NF99 534 aaPredicted RBP16.22■□□□□ 0.19
CHD3-211ENST00000481999 AMNQ9BXJ7 453 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 TMX2Q9Y320 296 aa16.22■□□□□ 0.19
CHD3-211ENST00000481999 FCER1AP12319 257 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 CAP2P40123 477 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 STAT2P52630 851 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 DLK2Q6UY11 383 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 PNMA5Q96PV4 448 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 ETF1P62495 437 aaKnown RBP16.21■□□□□ 0.19
CHD3-211ENST00000481999 MCM6Q14566 821 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 PPP1R18Q6NYC8 613 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 DYMQ7RTS9 669 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 TEPSINQ96N21 525 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 BLOC1S4Q9NUP1 217 aa16.21■□□□□ 0.19
CHD3-211ENST00000481999 PHLPP2Q6ZVD8 1323 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 CCT6AP40227 531 aaKnown RBP16.2■□□□□ 0.18
CHD3-211ENST00000481999 APTXQ7Z2E3 356 aaKnown RBP16.2■□□□□ 0.18
CHD3-211ENST00000481999 FAM177A1Q8N128 213 aaPredicted RBP16.2■□□□□ 0.18
CHD3-211ENST00000481999 ARHGEF10LQ9HCE6 1279 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 COL2A1P02458 1487 aaPredicted RBP16.2■□□□□ 0.18
CHD3-211ENST00000481999 FAM86B1E9PN63 330 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 NKRFO15226 690 aaKnown RBP eCLIP16.2■□□□□ 0.18
CHD3-211ENST00000481999 ARHGAP6O43182 974 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 ZSCAN12O43309 604 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 FAM86B2P0C5J1 330 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 ERCC5P28715 1186 aaPredicted RBP16.2■□□□□ 0.18
CHD3-211ENST00000481999 PRR16Q569H4 304 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 CT47A1Q5JQC4 288 aaPredicted RBP16.2■□□□□ 0.18
CHD3-211ENST00000481999 SNX29Q8TEQ0 813 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 NELFBQ8WX92 580 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 ZNF341Q9BYN7 854 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 TRIM9Q9C026 710 aa16.2■□□□□ 0.18
CHD3-211ENST00000481999 PHF20L1A8MW92 1017 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 ZNF658Q5TYW1 1059 aaPredicted RBP16.19■□□□□ 0.18
CHD3-211ENST00000481999 MTMR14Q8NCE2 650 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 PRDM10Q9NQV6 1147 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 CNOT7Q9UIV1 285 aaKnown RBP16.19■□□□□ 0.18
CHD3-211ENST00000481999 HACL1Q9UJ83 578 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 MARCH6O60337 910 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 CFBP00751 764 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 ZSCAN20P17040 1043 aaPredicted RBP16.19■□□□□ 0.18
CHD3-211ENST00000481999 STK4Q13043 487 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 TBX2Q13207 712 aaPredicted RBP16.19■□□□□ 0.18
CHD3-211ENST00000481999 SPATA1Q5VX52 437 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 FAM83AQ86UY5 434 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 GLIS3Q8NEA6 775 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 AK8Q96MA6 479 aa16.19■□□□□ 0.18
CHD3-211ENST00000481999 DDX41Q9UJV9 622 aaKnown RBP16.19■□□□□ 0.18
CHD3-211ENST00000481999 INPP5BP32019 993 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 ADKP55263 362 aaKnown RBP16.18■□□□□ 0.18
CHD3-211ENST00000481999 ASIC1P78348 528 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 ARHGAP4P98171 946 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 ELF2Q15723 593 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 NBPF12Q5TAG4 269 aaPredicted RBP16.18■□□□□ 0.18
CHD3-211ENST00000481999 SPECC1LQ69YQ0 1117 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 PPP4R3AQ6IN85 833 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.18■□□□□ 0.18
CHD3-211ENST00000481999 V9GYY5 206 aaPredicted RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms