RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PBX2P40425 430 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 WTAPQ15007 396 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 RASIP1Q5U651 963 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 TMEM199Q8N511 208 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 RGS22Q8NE09 1264 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 OR6J1Q8NGC5 347 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 MAP4K1Q92918 833 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 ZNF576Q9H609 170 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 MRPL11Q9Y3B7 192 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 Q9Y3F1 56 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 SPTBN5Q9NRC6 3674 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 SCN10AQ9Y5Y9 1956 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 GRIN2DO15399 1336 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 RBM47A0AV96 593 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 B4DLN1 442 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 TLR3O15455 904 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 CABYRO75952 493 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 MRPL12P52815 198 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 GRM4Q14833 912 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 SART3Q15020 963 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 PPP2R5BQ15173 497 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 ZNF365Q70YC5 407 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 MCF2L2Q86YR7 1114 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 USP38Q8NB14 1042 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 SLC43A3Q8NBI5 491 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 SYTL5Q8TDW5 730 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 TAAR1Q96RJ0 339 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 COL20A1Q9P218 1284 aa18.29■□□□□ 0.52
CCDC88B-205ENST00000472524 UMODL1Q5DID0 1318 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 PALM3A6NDB9 673 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 PSMC6P62333 389 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 ITGA7Q13683 1181 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 TMEM67Q5HYA8 995 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 CENPQQ7L2Z9 268 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 HOMER1Q86YM7 354 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 ESYT1Q9BSJ8 1104 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 AMNQ9BXJ7 453 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 PBX4Q9BYU1 374 aa18.28■□□□□ 0.52
CCDC88B-205ENST00000472524 CFBP00751 764 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 MYL3P08590 195 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 ANTXR2P58335 489 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 MB21D2Q8IYB1 491 aaPredicted RBP18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 SCFD2Q8WU76 684 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 COPS5Q92905 334 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 LSG1Q9H089 658 aaKnown RBP18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 TRPV6Q9H1D0 765 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 HIPK3Q9H422 1215 aa18.27■□□□□ 0.52
CCDC88B-205ENST00000472524 ZBTB5O15062 677 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 NKRFO15226 690 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 PPP1R11O60927 126 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 CPT1AP50416 773 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 SLC35G1Q2M3R5 365 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 ARHGEF16Q5VV41 709 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 PSRC1Q6PGN9 363 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 CATIPQ7Z7H3 387 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 NSUN6Q8TEA1 469 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 MTMR8Q96EF0 704 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 RMDN3Q96TC7 470 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 MAF1Q9H063 256 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 IL23AQ9NPF7 189 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 POLR3EQ9NVU0 708 aa18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 CXXC1Q9P0U4 656 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-205ENST00000472524 TRIP12Q14669 1992 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 OPLAHO14841 1288 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 B4GALT4O60513 344 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 ARIH2O95376 493 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 TXNP10599 105 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 EIF2AK2P19525 551 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 CCL23P55773 120 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 TTLL4Q14679 1199 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 CASC1Q6TDU7 716 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 SEPT14Q6ZU15 432 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 IGDCC4Q8TDY8 1250 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 HERVK_113Q902F9 699 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 PIGSQ96S52 555 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 ANO2Q9NQ90 1003 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 PCDHA1Q9Y5I3 950 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 MYO9BQ13459 2157 aa18.25■□□□□ 0.51
CCDC88B-205ENST00000472524 SCN5AQ14524 2016 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 SLC27A2O14975 620 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 PRC1O43663 620 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 PURAQ00577 322 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 TROAPQ12815 778 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 BRDTQ58F21 947 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 PIBF1Q8WXW3 757 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 MYL10Q9BUA6 226 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 NOC4LQ9BVI4 516 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 WNT8AQ9H1J5 351 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 PRDM12Q9H4Q4 367 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 RIOX1Q9H6W3 641 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 GPHNQ9NQX3 736 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 CHD9Q3L8U1 2897 aa18.24■□□□□ 0.51
CCDC88B-205ENST00000472524 GBF1Q92538 1859 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 DOCK5Q9H7D0 1870 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 CYTH3O43739 400 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 FGBP02675 491 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 HSD17B4P51659 736 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 STXBP2Q15833 593 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 BMP2KLQ5H9B9 411 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 CREB3L3Q68CJ9 461 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms