RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DLC1Q96QB1 1528 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 COL14A1Q05707 1796 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 KNDC1Q76NI1 1749 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 GTPBP10A4D1E9 387 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 E2F6O75461 281 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 MTRF1O75570 445 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 KIAA0754O94854 1291 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SLFN14P0C7P3 912 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 XRCC6P12956 609 aaKnown RBP eCLIP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 TATP17735 454 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CYP11B2P19099 503 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 OAS2P29728 719 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 MAP2K2P36507 400 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CLCQ05315 142 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 TYRO3Q06418 890 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 POU4F2Q12837 409 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 MYBPC3Q14896 1274 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 NBPF8Q3BBV2 869 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CCSAPQ6IQ19 270 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 FAM117BQ6P1L5 589 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 ZNF449Q6P9G9 518 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SV2BQ7L1I2 683 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 C11orf74Q86VG3 221 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 WDR66Q8TBY9 1149 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CNTNAP3BQ96NU0 1288 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SPAG5Q96R06 1193 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 NELL2Q99435 816 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SH3GL3Q99963 347 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 ZKSCAN3Q9BRR0 538 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CNTNAP3Q9BZ76 1288 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 OSBPL5Q9H0X9 879 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 A0A0B4J203 849 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 LINC00854A0A1B0GVQ3 168 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 CA8P35219 290 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 BPIFB3P59826 476 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 PDE4BQ07343 736 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 SSRP1Q08945 709 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 VPS72Q15906 364 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 EZH2Q15910 746 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 HIF1AQ16665 826 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 KIAA1614Q5VZ46 1190 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 MRM1Q6IN84 353 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 MTHFD1LQ6UB35 978 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 FIP1L1Q6UN15 594 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 AGMOQ6ZNB7 445 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 RASGRP2Q7LDG7 609 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 PRICKLE2Q7Z3G6 844 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 LSRQ86X29 649 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 CCDC65Q8IXS2 484 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 THAP3Q8WTV1 239 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 SERINC2Q96SA4 455 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 ZIC5Q96T25 663 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 KLF16Q9BXK1 252 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 MAK16Q9BXY0 300 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 CAPS2Q9BXY5 557 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 TSPY26PQ9H489 355 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 ANTXR1Q9H6X2 564 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 PPCSQ9HAB8 311 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 SENP2Q9HC62 589 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 DZANK1Q9NVP4 752 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 QPCTLQ9NXS2 382 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 CCDC163A0A0D9SF12 145 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 FGFR1OPO95684 399 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 UBXN2AP68543 259 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 TCEA2Q15560 299 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 TMEM95Q3KNT9 176 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 FAM182BQ5T319 152 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 COL13A1Q5TAT6 717 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 NAIF1Q69YI7 327 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 NEK10Q6ZWH5 1172 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 DDX42Q86XP3 938 aaKnown RBP eCLIP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 FAXDC2Q96IV6 333 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 RSRC1Q96IZ7 334 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 DIAPH3Q9NSV4 1193 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 TYW1Q9NV66 732 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 MKL2Q9ULH7 1088 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 PPM1HQ9ULR3 514 aa5.46□□□□□ -1.54
CCDC88A-209ENST00000456975 CASZ1Q86V15 1759 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 GPRASP1Q5JY77 1395 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 TONSLQ96HA7 1378 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 PLEKHH1Q9ULM0 1364 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 EIF3FO00303 357 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 GRIN3BO60391 1043 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 MMP20O60882 483 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 B3GALNT1O75752 331 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 RLBP1P12271 317 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 EDN3P14138 238 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 TPP2P29144 1249 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 WDR4P57081 412 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 EXOSC10Q01780 885 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 FAAP100Q0VG06 881 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 INO80DQ53TQ3 878 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 LLGL2Q6P1M3 1020 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 CCDC80Q76M96 950 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 DCLK2Q8N568 766 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 ANKRD20A12PQ8NF67 263 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 N4BP2L2Q92802 583 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 OSMRQ99650 979 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 ZNF304Q9HCX3 659 aa5.45□□□□□ -1.54
CCDC88A-209ENST00000456975 PTPRHQ9HD43 1115 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms