RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 LRRC15Q8TF66 581 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 BAG1Q99933 345 aaPredicted RBP15.3■□□□□ 0.04
CLK3-203ENST00000454830 BMP2KQ9NSY1 1161 aaPredicted RBP15.3■□□□□ 0.04
CLK3-203ENST00000454830 FBXO28Q9NVF7 368 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 UBXN1Q04323 297 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 TNIP1Q15025 636 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 KRT31Q15323 416 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 PRIMPOLQ96LW4 560 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 MTMR9Q96QG7 549 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 GLIS2Q9BZE0 524 aaPredicted RBP15.3■□□□□ 0.04
CLK3-203ENST00000454830 CUEDC2Q9H467 287 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 KIAA1024Q9UPX6 916 aa15.3■□□□□ 0.04
CLK3-203ENST00000454830 RIOK3O14730 519 aaKnown RBP15.29■□□□□ 0.04
CLK3-203ENST00000454830 CACNB1Q02641 598 aaPredicted RBP15.29■□□□□ 0.04
CLK3-203ENST00000454830 RASSF7Q02833 373 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 GRB10Q13322 594 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 GMCL1P1Q8NEA9 526 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 CCDC112Q8NEF3 446 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 GMCL1Q96IK5 515 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 GMLQ99445 158 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 MMTAG2Q9BU76 263 aaKnown RBP15.29■□□□□ 0.04
CLK3-203ENST00000454830 ZNF341Q9BYN7 854 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 SPAG1Q07617 926 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 GCFC2P16383 781 aaKnown RBP15.29■□□□□ 0.04
CLK3-203ENST00000454830 MTIF2P46199 727 aaKnown RBP15.29■□□□□ 0.04
CLK3-203ENST00000454830 STK4Q13043 487 aa15.29■□□□□ 0.04
CLK3-203ENST00000454830 TULP1O00294 542 aaPredicted RBP15.28■□□□□ 0.04
CLK3-203ENST00000454830 CHURC1Q8WUH1 139 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 HOMER2Q9NSB8 354 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 ATRNL1Q5VV63 1379 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 CHMP2AO43633 222 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 EGFRP00533 1210 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 TGFB2P61812 414 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 LRRC41Q15345 812 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 SH2D4AQ9H788 454 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 AKR1B15C9JRZ8 316 aaPredicted RBP15.28■□□□□ 0.04
CLK3-203ENST00000454830 FXR2P51116 673 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLK3-203ENST00000454830 COPB1P53618 953 aaKnown RBP15.28■□□□□ 0.04
CLK3-203ENST00000454830 PMS1P54277 932 aaKnown RBP15.28■□□□□ 0.04
CLK3-203ENST00000454830 CYP4A11Q02928 519 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 ORC2Q13416 577 aaPredicted RBP15.28■□□□□ 0.04
CLK3-203ENST00000454830 CT47A1Q5JQC4 288 aaPredicted RBP15.28■□□□□ 0.04
CLK3-203ENST00000454830 PRAMEF18Q5VWM3 479 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 PPP4R3AQ6IN85 833 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 CNNM4Q6P4Q7 775 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 ADSSL1Q8N142 457 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 TBC1D5Q92609 795 aa15.28■□□□□ 0.04
CLK3-203ENST00000454830 MYMKA6NI61 221 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 E9PMD0 336 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 MEIS1O00470 390 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 NR1I3Q14994 352 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 KIAA1755Q5JYT7 1200 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 MICALL2Q8IY33 904 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 HAS1Q92839 578 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 MTMR8Q96EF0 704 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 TANGO6Q9C0B7 1094 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 MTFR1LQ9H019 292 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 MAGEF1Q9HAY2 307 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 PKD2L1Q9P0L9 805 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 UTRNP46939 3433 aa15.27■□□□□ 0.04
CLK3-203ENST00000454830 A0A1B0GTH6 734 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 POTEB3A0JP26 581 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 POTECB2RU33 542 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 MEIS2O14770 477 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 ASNSP08243 561 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 RBL2Q08999 1139 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 E4F1Q66K89 784 aaPredicted RBP15.27■□□□□ 0.03
CLK3-203ENST00000454830 POTEBQ6S5H4 581 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 PNMA5Q96PV4 448 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 NAP1L4Q99733 375 aaKnown RBP15.27■□□□□ 0.03
CLK3-203ENST00000454830 DESI2Q9BSY9 194 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 TMX2Q9Y320 296 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 H7C1D1 291 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 RHOBTB3O94955 611 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 MYL1P05976 194 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 CAP2P40123 477 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 GMPSP49915 693 aaPredicted RBP15.27■□□□□ 0.03
CLK3-203ENST00000454830 PRKG1Q13976 671 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 TCP11X2Q5H9J9 407 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 SLC30A10Q6XR72 485 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 KCNK18Q7Z418 384 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 DDX12PQ92771 950 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 STK17AQ9UEE5 414 aa15.27■□□□□ 0.03
CLK3-203ENST00000454830 ADD3Q9UEY8 706 aaKnown RBP15.27■□□□□ 0.03
CLK3-203ENST00000454830 KLRC4O43908 158 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 AP3B2Q13367 1082 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 SYT10Q6XYQ8 523 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 TRMT1LQ7Z2T5 733 aaKnown RBP15.26■□□□□ 0.03
CLK3-203ENST00000454830 MYRIPQ8NFW9 859 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 FOCADQ5VW36 1801 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 CASP14P31944 242 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 CLK2P49760 499 aaKnown RBP15.26■□□□□ 0.03
CLK3-203ENST00000454830 PDIA5Q14554 519 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 KCNB1Q14721 858 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 KIF18AQ8NI77 898 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 FBXO41Q8TF61 875 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 RAD54LQ92698 747 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 PPP1R13BQ96KQ4 1090 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 VCPKMTQ9H867 229 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 TNFAIP1Q13829 316 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms