RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CNOT6LQ96LI5 555 aaKnown RBP16.78■□□□□ 0.28
PTPRF-206ENST00000429895 NT5C1BQ96P26 610 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 TYW1Q9NV66 732 aaKnown RBP16.78■□□□□ 0.28
PTPRF-206ENST00000429895 ADCY9O60503 1353 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 XPOTO43592 962 aaKnown RBP16.78■□□□□ 0.28
PTPRF-206ENST00000429895 PCCAP05165 728 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-206ENST00000429895 EHHADHQ08426 723 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 LLGL1Q15334 1064 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 PALD1Q9ULE6 856 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 CLIC2O15247 247 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 OPHN1O60890 802 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 SPDYE1Q8NFV5 336 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-206ENST00000429895 XDHP47989 1333 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 LOC102724428A0A0B4J2F2 783 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 RAD17O75943 681 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 SIK1P57059 783 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 COG7P83436 770 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 MIGA2Q7L4E1 593 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 HOMER3Q9NSC5 361 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 CPSF2Q9P2I0 782 aaKnown RBP16.77■□□□□ 0.28
PTPRF-206ENST00000429895 ABT1Q9ULW3 272 aaKnown RBP16.77■□□□□ 0.28
PTPRF-206ENST00000429895 MAP3K15Q6ZN16 1313 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 SERPINB6P35237 376 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 GALNT17Q6IS24 598 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 MAP7D3Q8IWC1 876 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 BBS5Q8N3I7 341 aa16.77■□□□□ 0.28
PTPRF-206ENST00000429895 PPP1R12AO14974 1030 aaPredicted RBP16.77■□□□□ 0.27
PTPRF-206ENST00000429895 TFAMQ00059 246 aaKnown RBP16.77■□□□□ 0.27
PTPRF-206ENST00000429895 IQCB1Q15051 598 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 AOC3Q16853 763 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 CFAP61Q8NHU2 1237 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 SLC7A3Q8WY07 619 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 MGEA5O60502 916 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 FOXD4Q12950 439 aaPredicted RBP16.77■□□□□ 0.27
PTPRF-206ENST00000429895 NLGN1Q8N2Q7 840 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 LRGUKQ96M69 825 aa16.77■□□□□ 0.27
PTPRF-206ENST00000429895 GPC4O75487 556 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 CCND2P30279 289 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 MAP3K21Q5TCX8 1036 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 TTC30AQ86WT1 665 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 TSC1Q92574 1164 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 ATP6V0A1Q93050 837 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 NXF1Q9UBU9 619 aaKnown RBP16.76■□□□□ 0.27
PTPRF-206ENST00000429895 PCDHA7Q9UN72 937 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 LRRN2O75325 713 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 OLA1Q9NTK5 396 aaKnown RBP16.76■□□□□ 0.27
PTPRF-206ENST00000429895 INHBAP08476 426 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 SRGAP2BP0DMP2 458 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 LONP1P36776 959 aaKnown RBP16.76■□□□□ 0.27
PTPRF-206ENST00000429895 ASPHQ12797 758 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 RAB44Q7Z6P3 723 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-206ENST00000429895 IL17REQ8NFR9 667 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 TMEM63CQ9P1W3 806 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 CPSF3Q9UKF6 684 aaKnown RBP16.76■□□□□ 0.27
PTPRF-206ENST00000429895 PTPN21Q16825 1174 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 ERFEQ4G0M1 354 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 RNF217Q8TC41 542 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 SDCCAG3Q96C92 435 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 USP44Q9H0E7 712 aa16.76■□□□□ 0.27
PTPRF-206ENST00000429895 ATF5Q9Y2D1 282 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-206ENST00000429895 PASKQ96RG2 1323 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 M0R2C6 588 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 TTC30BQ8N4P2 665 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 CEP170P1Q96L14 293 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 ASAP1Q9ULH1 1129 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 TTLL1O95922 423 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 SNAP25P60880 206 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 MTERF2Q49AM1 385 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 LRRC8CQ8TDW0 803 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 PSDA5PKW4 1024 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-206ENST00000429895 MYO1FO00160 1098 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 NR2F2P24468 414 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 GOLGA8FQ08AF8 430 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 GOLGA8DPQ0D2H9 430 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 ARHGEF6Q15052 776 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 HP1BP3Q5SSJ5 553 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-206ENST00000429895 ARMC9Q7Z3E5 817 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 HAUS8Q9BT25 410 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 TM6SF1Q9BZW5 370 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 MARK3P27448 753 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 USP14P54578 494 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 GANCQ8TET4 914 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 HEXIM1O94992 359 aaKnown RBP16.75■□□□□ 0.27
PTPRF-206ENST00000429895 FOSP01100 380 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-206ENST00000429895 SERPINB2P05120 415 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 MAPK4P31152 587 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 RCN2Q14257 317 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 GDAP1Q8TB36 358 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 GBP5Q96PP8 586 aa16.75■□□□□ 0.27
PTPRF-206ENST00000429895 NUP153P49790 1475 aaKnown RBP16.74■□□□□ 0.27
PTPRF-206ENST00000429895 CMA1P23946 247 aa16.74■□□□□ 0.27
PTPRF-206ENST00000429895 SCRN1Q12765 414 aa16.74■□□□□ 0.27
PTPRF-206ENST00000429895 FAM196AQ6ZSG2 479 aa16.74■□□□□ 0.27
PTPRF-206ENST00000429895 DNAAF3Q8N9W5 541 aa16.74■□□□□ 0.27
PTPRF-206ENST00000429895 SEC31BQ9NQW1 1179 aa16.74■□□□□ 0.27
PTPRF-206ENST00000429895 GOLGA8KD6RF30 607 aa16.74■□□□□ 0.27
PTPRF-206ENST00000429895 GSPT1P15170 499 aaKnown RBP16.74■□□□□ 0.27
PTPRF-206ENST00000429895 PDIA3P30101 505 aaKnown RBP16.74■□□□□ 0.27
PTPRF-206ENST00000429895 COPB1P53618 953 aaKnown RBP16.74■□□□□ 0.27
PTPRF-206ENST00000429895 ZNF445P59923 1031 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms