RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ZSCAN29Q8IWY8 852 aaPredicted RBP15.95■□□□□ 0.14
LIG1-202ENST00000427526 SNED1Q8TER0 1413 aa15.95■□□□□ 0.14
LIG1-202ENST00000427526 BICDL2A1A5D9 508 aa15.95■□□□□ 0.14
LIG1-202ENST00000427526 SMCO2A6NFE2 343 aa15.95■□□□□ 0.14
LIG1-202ENST00000427526 HNRNPH2P55795 449 aaKnown RBP15.95■□□□□ 0.14
LIG1-202ENST00000427526 KRT83P78385 493 aa15.95■□□□□ 0.14
LIG1-202ENST00000427526 MCM6Q14566 821 aa15.95■□□□□ 0.14
LIG1-202ENST00000427526 PDE11AQ9HCR9 933 aa15.95■□□□□ 0.14
LIG1-202ENST00000427526 DDX4Q9NQI0 724 aaKnown RBP15.95■□□□□ 0.14
LIG1-202ENST00000427526 SMARCA1P28370 1054 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 KLK7P49862 253 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 GYS2P54840 703 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 TBC1D8BQ0IIM8 1120 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 CCDC122Q5T0U0 273 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 NEK8Q86SG6 692 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 TXLNBQ8N3L3 684 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 NEK11Q8NG66 645 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 NEDD1Q8NHV4 660 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 EEF2KMTQ96G04 330 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 PSD3Q9NYI0 1048 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 HDAC6Q9UBN7 1215 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 H0YIN7 160 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 ENC1O14682 589 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 ATP1A1P05023 1023 aaKnown RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 FCER1AP12319 257 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 GNA11P29992 359 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 ZBED6P86452 979 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 SLC15A2Q16348 729 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 CCDC170Q8IYT3 715 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 EXOC4Q96A65 974 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 CNOT6LQ96LI5 555 aaKnown RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 ZNF287Q9HBT7 754 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 C6orf50Q9HD87 102 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 RCCD1A6NED2 376 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 EIF3CLB5ME19 914 aaKnown RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 TRIM21P19474 475 aaKnown RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 PPP1R2P41236 205 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 TECP42680 631 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 NOVP48745 357 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 IRX3P78415 501 aaPredicted RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 FIGNQ5HY92 759 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 ERGIC2Q96RQ1 377 aa15.94■□□□□ 0.14
LIG1-202ENST00000427526 EIF3CQ99613 913 aaKnown RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 NHEJ1Q9H9Q4 299 aaPredicted RBP15.94■□□□□ 0.14
LIG1-202ENST00000427526 NKRFO15226 690 aaKnown RBP eCLIP15.93■□□□□ 0.14
LIG1-202ENST00000427526 CDK17Q00537 523 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 GPS2Q13227 327 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 USP17L2Q6R6M4 530 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 FAM114A1Q8IWE2 563 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 LACRTQ9GZZ8 138 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 GBP3Q9H0R5 595 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 USP40Q9NVE5 1235 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 SAR1BQ9Y6B6 198 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 CDK5RAP2Q96SN8 1893 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 COL11A2P13942 1736 aaPredicted RBP15.93■□□□□ 0.14
LIG1-202ENST00000427526 DDX60LQ5H9U9 1706 aaKnown RBP15.93■□□□□ 0.14
LIG1-202ENST00000427526 A0A1W2PQJ5 194 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 ASIC1P78348 528 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 CASP8Q14790 479 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 KIAA0895Q8NCT3 520 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 CCDC47Q96A33 483 aaKnown RBP15.93■□□□□ 0.14
LIG1-202ENST00000427526 PURBQ96QR8 312 aaKnown RBP15.93■□□□□ 0.14
LIG1-202ENST00000427526 PDGFDQ9GZP0 370 aaPredicted RBP15.93■□□□□ 0.14
LIG1-202ENST00000427526 SUGT1Q9Y2Z0 365 aa15.93■□□□□ 0.14
LIG1-202ENST00000427526 KRT86O43790 486 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 CYLC1P35663 651 aaPredicted RBP15.92■□□□□ 0.14
LIG1-202ENST00000427526 AMPD3Q01432 767 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 MAPK8IP2Q13387 824 aaPredicted RBP15.92■□□□□ 0.14
LIG1-202ENST00000427526 ORC2Q13416 577 aaPredicted RBP15.92■□□□□ 0.14
LIG1-202ENST00000427526 TBCKQ8TEA7 893 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 RRP36Q96EU6 259 aaKnown RBP15.92■□□□□ 0.14
LIG1-202ENST00000427526 CAMKK2Q96RR4 588 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 MMS19Q96T76 1030 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 SEMA6BQ9H3T3 888 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 USP14P54578 494 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 CENPPQ6IPU0 288 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 JAKMIP2Q96AA8 810 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 CEP95Q96GE4 821 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 MTMR9Q96QG7 549 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 NOC4LQ9BVI4 516 aaKnown RBP15.92■□□□□ 0.14
LIG1-202ENST00000427526 PCDHAC2Q9Y5I4 1007 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 CNNM4Q6P4Q7 775 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 EHBP1Q8NDI1 1231 aa15.92■□□□□ 0.14
LIG1-202ENST00000427526 ZNHIT6Q9NWK9 470 aaKnown RBP15.92■□□□□ 0.14
LIG1-202ENST00000427526 ESYT2A0FGR8 921 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 SRGAP2O75044 1071 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 N4BP1O75113 896 aaKnown RBP15.91■□□□□ 0.14
LIG1-202ENST00000427526 EIF3JO75822 258 aaKnown RBP15.91■□□□□ 0.14
LIG1-202ENST00000427526 SLURP2P0DP57 97 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 MTIF2P46199 727 aaKnown RBP15.91■□□□□ 0.14
LIG1-202ENST00000427526 IRX5P78411 483 aaPredicted RBP15.91■□□□□ 0.14
LIG1-202ENST00000427526 APOBEC3HQ6NTF7 200 aaKnown RBP15.91■□□□□ 0.14
LIG1-202ENST00000427526 CDC42EP5Q6NZY7 148 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 KIAA1328Q86T90 577 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 HPS3Q969F9 1004 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 PIGSQ96S52 555 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 HNRNPH3P31942 346 aaKnown RBP15.91■□□□□ 0.14
LIG1-202ENST00000427526 STYK1Q6J9G0 422 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 POTEDQ86YR6 584 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 KIAA0825Q8IV33 1275 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms