RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 MYRFQ9Y2G1 1151 aa8.3□□□□□ -1.08
LINC01040-201ENST00000425048 DUSP10Q9Y6W6 482 aa8.3□□□□□ -1.08
LINC01040-201ENST00000425048 C7orf72A4D263 438 aa8.29□□□□□ -1.08
LINC01040-201ENST00000425048 WWC2Q6AWC2 1192 aa8.29□□□□□ -1.08
LINC01040-201ENST00000425048 ZBTB8AQ96BR9 441 aa8.29□□□□□ -1.08
LINC01040-201ENST00000425048 TMPRSS5Q9H3S3 457 aa8.29□□□□□ -1.08
LINC01040-201ENST00000425048 SMARCA5O60264 1052 aaPredicted RBP8.28□□□□□ -1.08
LINC01040-201ENST00000425048 FUCA1P04066 466 aa8.28□□□□□ -1.08
LINC01040-201ENST00000425048 ZNF761Q86XN6 746 aaPredicted RBP8.28□□□□□ -1.08
LINC01040-201ENST00000425048 LINC00482Q8N8I6 264 aa8.28□□□□□ -1.08
LINC01040-201ENST00000425048 PCDH18Q9HCL0 1135 aa8.28□□□□□ -1.08
LINC01040-201ENST00000425048 SCAMP3O14828 347 aaKnown RBP8.27□□□□□ -1.09
LINC01040-201ENST00000425048 NTRK1P04629 796 aa8.27□□□□□ -1.09
LINC01040-201ENST00000425048 ITGB3P05106 788 aa8.27□□□□□ -1.09
LINC01040-201ENST00000425048 MAGEA10P43363 369 aaPredicted RBP8.27□□□□□ -1.09
LINC01040-201ENST00000425048 PUM1Q14671 1186 aaKnown RBP eCLIP8.27□□□□□ -1.09
LINC01040-201ENST00000425048 PPP2R5EQ16537 467 aa8.27□□□□□ -1.09
LINC01040-201ENST00000425048 KLHL6Q8WZ60 621 aa8.27□□□□□ -1.09
LINC01040-201ENST00000425048 DDX11Q96FC9 970 aa8.27□□□□□ -1.09
LINC01040-201ENST00000425048 AKT3Q9Y243 479 aa8.27□□□□□ -1.09
LINC01040-201ENST00000425048 CYP2C8P10632 490 aa8.26□□□□□ -1.09
LINC01040-201ENST00000425048 RASGRP4Q8TDF6 673 aa8.26□□□□□ -1.09
LINC01040-201ENST00000425048 ANKRD34BA5PLL1 514 aa8.25□□□□□ -1.09
LINC01040-201ENST00000425048 SMAD4Q13485 552 aaKnown RBP8.25□□□□□ -1.09
LINC01040-201ENST00000425048 KIAA1211LQ6NV74 962 aa8.25□□□□□ -1.09
LINC01040-201ENST00000425048 ADAMTS17Q8TE56 1095 aa8.25□□□□□ -1.09
LINC01040-201ENST00000425048 GPRASP2Q96D09 838 aa8.25□□□□□ -1.09
LINC01040-201ENST00000425048 MMP19Q99542 508 aa8.25□□□□□ -1.09
LINC01040-201ENST00000425048 SIT1Q9Y3P8 196 aa8.25□□□□□ -1.09
LINC01040-201ENST00000425048 KIAA2012Q0VF49 1180 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 TMCO4Q5TGY1 634 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 DCP2Q8IU60 420 aaKnown RBP8.24□□□□□ -1.09
LINC01040-201ENST00000425048 PLEKHO2Q8TD55 490 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 COPS5Q92905 334 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 RBM15Q96T37 977 aaKnown RBP eCLIP8.24□□□□□ -1.09
LINC01040-201ENST00000425048 APBA2Q99767 749 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 SMPD4Q9NXE4 827 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 CLEC1BQ9P126 229 aa8.24□□□□□ -1.09
LINC01040-201ENST00000425048 KCNH1O95259 989 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 CASP7P55210 303 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 POMZP3Q6PJE2 187 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 VHLLQ6RSH7 139 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 ETV3LQ6ZN32 361 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 CRACR2BQ8N4Y2 399 aaPredicted RBP8.23□□□□□ -1.09
LINC01040-201ENST00000425048 ZNF513Q8N8E2 541 aaPredicted RBP8.23□□□□□ -1.09
LINC01040-201ENST00000425048 CPLX3Q8WVH0 158 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 GORASP1Q9BQQ3 440 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 C11orf84Q9BUA3 381 aaPredicted RBP8.23□□□□□ -1.09
LINC01040-201ENST00000425048 AP5M1Q9H0R1 490 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 GPRC5CQ9NQ84 441 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 EMC9Q9Y3B6 208 aa8.23□□□□□ -1.09
LINC01040-201ENST00000425048 C8BP07358 591 aa8.22□□□□□ -1.09
LINC01040-201ENST00000425048 PLS3P13797 630 aa8.22□□□□□ -1.09
LINC01040-201ENST00000425048 RPL13P26373 211 aaKnown RBP8.22□□□□□ -1.09
LINC01040-201ENST00000425048 KYQ8NBH2 561 aa8.22□□□□□ -1.09
LINC01040-201ENST00000425048 BVESQ8NE79 360 aa8.22□□□□□ -1.09
LINC01040-201ENST00000425048 DPF3Q92784 378 aa8.22□□□□□ -1.09
LINC01040-201ENST00000425048 MARCH2Q9P0N8 246 aa8.22□□□□□ -1.09
LINC01040-201ENST00000425048 NOP56O00567 594 aaKnown RBP8.21□□□□□ -1.1
LINC01040-201ENST00000425048 VAMP1P23763 118 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 ADAM17P78536 824 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 SCRN1Q12765 414 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 RGL3Q3MIN7 710 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 CD300LDQ6UXZ3 194 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 METTL16Q86W50 562 aaKnown RBP8.21□□□□□ -1.1
LINC01040-201ENST00000425048 SHDQ96IW2 340 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 APEX2Q9UBZ4 518 aa8.21□□□□□ -1.1
LINC01040-201ENST00000425048 SGSM2O43147 1006 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 NAT2P11245 290 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 THBS2P35442 1172 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 NASPP49321 788 aaPredicted RBP8.2□□□□□ -1.1
LINC01040-201ENST00000425048 FAM124AQ86V42 546 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 ZC3H18Q86VM9 953 aaKnown RBP8.2□□□□□ -1.1
LINC01040-201ENST00000425048 TTLL6Q8N841 843 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 SEC14L1Q92503 715 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 CYP26B1Q9NR63 512 aa8.2□□□□□ -1.1
LINC01040-201ENST00000425048 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.2□□□□□ -1.1
LINC01040-201ENST00000425048 C22orf46C9J442 243 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 RECKO95980 971 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 PLATP00750 562 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 ZNF143P52747 638 aaPredicted RBP8.19□□□□□ -1.1
LINC01040-201ENST00000425048 MBLAC2Q68D91 279 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 IQCEQ6IPM2 695 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 MIB1Q86YT6 1006 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 LGI4Q8N135 537 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 SAMD11Q96NU1 681 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 BTG4Q9NY30 223 aa8.19□□□□□ -1.1
LINC01040-201ENST00000425048 THBDP07204 575 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 GJA8P48165 433 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 TBC1D10BQ4KMP7 808 aaPredicted RBP8.18□□□□□ -1.1
LINC01040-201ENST00000425048 FAM26FQ5R3K3 315 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 CPZQ66K79 652 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 TEX2Q8IWB9 1127 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 FAM26EQ8N5C1 309 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 LOXL4Q96JB6 756 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 SEC16BQ96JE7 1060 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 SYT3Q9BQG1 590 aa8.18□□□□□ -1.1
LINC01040-201ENST00000425048 MROH6A6NGR9 719 aa8.17□□□□□ -1.1
LINC01040-201ENST00000425048 INF2Q27J81 1249 aa8.17□□□□□ -1.1
LINC01040-201ENST00000425048 GTF2IRD2BQ6EKJ0 949 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms