RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 GTF2IRD2BQ6EKJ0 949 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 GTF2IRD2Q86UP8 949 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 SUGP1Q8IWZ8 645 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 MICALL1Q8N3F8 863 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 NGDNQ8NEJ9 315 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 ACO2Q99798 780 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 MKRN2Q9H000 416 aaKnown RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 CYP26B1Q9NR63 512 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 CGGBP1Q9UFW8 167 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-207ENST00000419472 PDZRN3Q9UPQ7 1066 aa6.21□□□□□ -1.42
VPS13A-207ENST00000419472 PCF11O94913 1555 aaKnown RBP6.2□□□□□ -1.42
VPS13A-207ENST00000419472 ATP2A2P16615 1042 aaKnown RBP6.2□□□□□ -1.42
VPS13A-207ENST00000419472 TYRP1P17643 537 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 GBP1P32455 592 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 GPSM2P81274 684 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 RASSF7Q02833 373 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 TOMM20Q15388 145 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 KCTD13Q8WZ19 329 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 DISC1Q9NRI5 854 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 ADAM30Q9UKF2 790 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 PTPN22Q9Y2R2 807 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 DGKBQ9Y6T7 804 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 LRRIQ1Q96JM4 1722 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 hCG_1642624A0A1W2PR95 340 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 PRRT4C9JH25 899 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 CTNND1O60716 968 aaKnown RBP6.2□□□□□ -1.42
VPS13A-207ENST00000419472 GAS7O60861 476 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 ECI1P42126 302 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 AK2P54819 239 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 BIRC3Q13489 604 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 LAMC2Q13753 1193 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 MPP4Q96JB8 637 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 TMEM87BQ96K49 555 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 CRB3Q9BUF7 120 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 NUCKS1Q9H1E3 243 aaKnown RBP6.2□□□□□ -1.42
VPS13A-207ENST00000419472 NMRK2Q9NPI5 230 aa6.2□□□□□ -1.42
VPS13A-207ENST00000419472 SPDYE3A6NKU9 549 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 TIMM44O43615 452 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 GDF9O60383 454 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 PPM1BO75688 479 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 SNRPB2P08579 225 aaKnown RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 RBP3P10745 1247 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 RING1Q06587 406 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 LRRC32Q14392 662 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 PPP2R5DQ14738 602 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 POU4F3Q15319 338 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 CLUL1Q15846 466 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 MAMDC2Q7Z304 686 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 UBE3DQ7Z6J8 389 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 ZBTB34Q8NCN2 500 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 FAM156AQ8NDB6 213 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 DIO2Q92813 273 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 ORAI3Q9BRQ5 295 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 WNT10AQ9GZT5 417 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 ZNF69Q9UC07 566 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 LCHNA4D1U4 455 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 hCG_1984214I3L0E3 225 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 TNFAIP3P21580 790 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 NTF4P34130 210 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 ZC3H12AQ5D1E8 599 aaKnown RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 L1TD1Q5T7N2 865 aaKnown RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 IGF2-ASQ6U949 168 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 FAM43BQ6ZT52 329 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 CHST15Q7LFX5 561 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 NKAPQ8N5F7 415 aaKnown RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 ENOX1Q8TC92 643 aaKnown RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 XAGE3Q8WTP9 111 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 MYD88Q99836 296 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 WHRNQ9P202 907 aa6.19□□□□□ -1.42
VPS13A-207ENST00000419472 GPR55Q9Y2T6 319 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-207ENST00000419472 ZMYM4Q5VZL5 1548 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 RHOBTB3O94955 611 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 SRGAP2CP0DJJ0 459 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 YARSP54577 528 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 DDB1Q16531 1140 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 DBN1Q16643 649 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 CCDC174Q6PII3 467 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 SYT9Q86SS6 491 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 MTDHQ86UE4 582 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 DDX54Q8TDD1 881 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 SKA1Q96BD8 255 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 LPIN3Q9BQK8 851 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 GBP3Q9H0R5 595 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 NOL6Q9H6R4 1146 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 WASHC2AQ641Q2 1341 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 B4E1Z4 1266 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 RRP12Q5JTH9 1297 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 SLC35F1Q5T1Q4 408 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 BROXQ5VW32 411 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 LDHAL6AQ6ZMR3 332 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 MMS22LQ6ZRQ5 1243 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 DDX53Q86TM3 631 aaKnown RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 TEKT5Q96M29 485 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 GP6Q9HCN6 339 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 PCDHGC5Q9Y5F6 944 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 TROQ12816 1431 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-207ENST00000419472 VPS8Q8N3P4 1428 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 TTC37Q6PGP7 1564 aa6.18□□□□□ -1.42
VPS13A-207ENST00000419472 ADGRL1O94910 1474 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms