RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 PBX4Q9BYU1 374 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 IL23AQ9NPF7 189 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 ADD3Q9UEY8 706 aaKnown RBP12.18□□□□□ -0.46
CLRN3-201ENST00000368671 GRIN2DO15399 1336 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 CCDC171Q6TFL3 1326 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 B4GALT4O60513 344 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 PDHBP11177 359 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 HDAC1Q13547 482 aaPredicted RBP12.17□□□□□ -0.46
CLRN3-201ENST00000368671 CAMK2BQ13554 666 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 BTNL9Q6UXG8 535 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 MORC4Q8TE76 937 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 LNPKQ9C0E8 428 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 TRPV6Q9H1D0 765 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 TCP11L1Q9NUJ3 509 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 Q9Y3F1 56 aa12.17□□□□□ -0.46
CLRN3-201ENST00000368671 LAMA4Q16363 1823 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 ZMYM6O95789 1325 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 FGBP02675 491 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 MYL3P08590 195 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 DUSP28Q4G0W2 176 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 RASIP1Q5U651 963 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 RNF207Q6ZRF8 634 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 MFSD6Q6ZSS7 791 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 OTOP2Q7RTS6 562 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 TBC1D10CQ8IV04 446 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 USP38Q8NB14 1042 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 OR6J1Q8NGC5 347 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 PPM1EQ8WY54 764 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 HERVK_113Q902F9 699 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 KHSRPQ92945 711 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLRN3-201ENST00000368671 GAS2L1Q99501 681 aaPredicted RBP12.16□□□□□ -0.46
CLRN3-201ENST00000368671 ZKSCAN3Q9BRR0 538 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 WDR11Q9BZH6 1224 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 MTIF3Q9H2K0 278 aaKnown RBP12.16□□□□□ -0.46
CLRN3-201ENST00000368671 PRDM12Q9H4Q4 367 aa12.16□□□□□ -0.46
CLRN3-201ENST00000368671 CXXC1Q9P0U4 656 aaPredicted RBP12.16□□□□□ -0.46
CLRN3-201ENST00000368671 GOLGA8HP0CJ92 632 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 PDE4DQ08499 809 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 ZNF543Q08ER8 600 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 AKNAD1Q5T1N1 836 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 B4GALNT3Q6L9W6 998 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 CLEC4DQ8WXI8 215 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 SCLYQ96I15 445 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 NOC4LQ9BVI4 516 aaKnown RBP12.15□□□□□ -0.46
CLRN3-201ENST00000368671 SEZ6LQ9BYH1 1024 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 WNT8AQ9H1J5 351 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 NKX2-4Q9H2Z4 354 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 POLR3EQ9NVU0 708 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 MSRAQ9UJ68 235 aa12.15□□□□□ -0.46
CLRN3-201ENST00000368671 NEDD4P46934 1319 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 CYP2C9P11712 490 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 SDSP20132 328 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 CPT1AP50416 773 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 RPS6P62753 249 aaKnown RBP12.14□□□□□ -0.47
CLRN3-201ENST00000368671 RAB30Q15771 203 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 USH1GQ495M9 461 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 FAM47CQ5HY64 1035 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 PPP1R13LQ8WUF5 828 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 TTC14Q96N46 770 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 MPHOSPH6Q99547 160 aaKnown RBP12.14□□□□□ -0.47
CLRN3-201ENST00000368671 ALDH8A1Q9H2A2 487 aaPredicted RBP12.14□□□□□ -0.47
CLRN3-201ENST00000368671 CPVLQ9H3G5 476 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 RNF41Q9H4P4 317 aaPredicted RBP12.14□□□□□ -0.47
CLRN3-201ENST00000368671 TRMT13Q9NUP7 481 aaKnown RBP12.14□□□□□ -0.47
CLRN3-201ENST00000368671 PNMA2Q9UL42 364 aa12.14□□□□□ -0.47
CLRN3-201ENST00000368671 TNKSO95271 1327 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 WDR19Q8NEZ3 1342 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 LOC102724159A0A0B4J2E5 919 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 RBM47A0AV96 593 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 ZBBXA8MT70 800 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 ZNF213O14771 459 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 SNHG28P0DPA3 235 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 PCP11498 1178 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 RABGGTBP53611 331 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 MFAP1P55081 439 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 PURAQ00577 322 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 PPP2R5BQ15173 497 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 PWP2Q15269 919 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 RPUSD2Q8IZ73 545 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 ESR2Q92731 530 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 COPS5Q92905 334 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 MTG1Q9BT17 334 aaPredicted RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 UBA5Q9GZZ9 404 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 SLC28A3Q9HAS3 691 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 PRDM6Q9NQX0 595 aa12.13□□□□□ -0.47
CLRN3-201ENST00000368671 YBX2Q9Y2T7 364 aaKnown RBP12.13□□□□□ -0.47
CLRN3-201ENST00000368671 RAD50Q92878 1312 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 TANC1Q9C0D5 1861 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 SCN5AQ14524 2016 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 NUDT7P0C024 238 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 SUPT20HL2P0C7V6 817 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 IGFBP4P22692 258 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 BRDTQ58F21 947 aaPredicted RBP12.12□□□□□ -0.47
CLRN3-201ENST00000368671 GPATCH4Q5T3I0 446 aaKnown RBP12.12□□□□□ -0.47
CLRN3-201ENST00000368671 CWC27Q6UX04 472 aaKnown RBP12.12□□□□□ -0.47
CLRN3-201ENST00000368671 DEFB128Q7Z7B8 93 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 TICAM2Q86XR7 235 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 SYMPKQ92797 1274 aaKnown RBP12.12□□□□□ -0.47
CLRN3-201ENST00000368671 SLC4A7Q9Y6M7 1214 aa12.12□□□□□ -0.47
CLRN3-201ENST00000368671 POTEB3A0JP26 581 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms