RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 PASKQ96RG2 1323 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 CDC42EP1Q00587 391 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 MTMR1Q13613 665 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 CCDC150Q8NCX0 1101 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 RGS22Q8NE09 1264 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 SCFD2Q8WU76 684 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 RMND1Q9NWS8 449 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 FZD1Q9UP38 647 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 CHMP2AO43633 222 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 PTPREP23469 700 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 PRELPP51888 382 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 TREML2Q5T2D2 321 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 USP37Q86T82 979 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 KRI1Q8N9T8 703 aaKnown RBP10.36□□□□□ -0.75
UPF2-202ENST00000357604 NEK9Q8TD19 979 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 IGDCC4Q8TDY8 1250 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 FERMT2Q96AC1 680 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 EXOC7Q9UPT5 735 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 GPRASP2Q96D09 838 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 BICD1Q96G01 975 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 TEPSINQ96N21 525 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 MAGEC2Q9UBF1 373 aaPredicted RBP10.36□□□□□ -0.75
UPF2-202ENST00000357604 DDX39AO00148 427 aaKnown RBP10.36□□□□□ -0.75
UPF2-202ENST00000357604 FAM13AO94988 1023 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 PLEKHA8P1O95397 391 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 FGFR1OPO95684 399 aaKnown RBP10.36□□□□□ -0.75
UPF2-202ENST00000357604 JMJD4Q9H9V9 463 aa10.36□□□□□ -0.75
UPF2-202ENST00000357604 RBM19Q9Y4C8 960 aaKnown RBP10.36□□□□□ -0.75
UPF2-202ENST00000357604 ARHGEF35A5YM69 484 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 SLC26A4O43511 780 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 MBD3O95983 291 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 ADORA2AP29274 412 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 STAT6P42226 847 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 USP11P51784 963 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 SCRN1Q12765 414 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 LRCH2Q5VUJ6 765 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 BRI3BPQ8WY22 251 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 USP25Q9UHP3 1055 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 FER1L6Q2WGJ9 1857 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 CRHR2Q13324 411 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 BAATQ14032 418 aaPredicted RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 ADCK5Q3MIX3 580 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 FOXD4L6Q3SYB3 417 aaPredicted RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 SASS6Q6UVJ0 657 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 FOXD4L3Q6VB84 417 aaPredicted RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 RASEFQ8IZ41 740 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 MOV10L1Q9BXT6 1211 aaKnown RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 SLC38A10Q9HBR0 1119 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 SPDYE16A6NNV3 312 aaPredicted RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 ITGBL1O95965 494 aaPredicted RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 METTL16Q86W50 562 aaKnown RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 SPATA33Q96N06 139 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 TPCN1Q9ULQ1 816 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 TPM3P06753 285 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 TXNP10599 105 aaKnown RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 DGKDQ16760 1214 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 ME3Q16798 604 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 TCP11Q8WWU5 503 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 KCNB2Q92953 911 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 INCENPQ9NQS7 918 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 DIS3Q9Y2L1 958 aaKnown RBP10.35□□□□□ -0.75
UPF2-202ENST00000357604 NR2E3Q9Y5X4 410 aa10.35□□□□□ -0.75
UPF2-202ENST00000357604 PALM3A6NDB9 673 aaPredicted RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 CCDC85CA6NKD9 419 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 BTNL9Q6UXG8 535 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 ESYT2A0FGR8 921 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 ADD1P35611 737 aaKnown RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 TTBK2Q6IQ55 1244 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 NOSTRINQ8IVI9 506 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 DNM3Q9UQ16 869 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 MROH7Q68CQ1 1323 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 EIF3JO75822 258 aaKnown RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 OR52Z1P0C646 297 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 HSPA1AP0DMV8 641 aaKnown RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 HSPA1BP0DMV9 641 aaKnown RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 HOXA13P31271 388 aaPredicted RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 STRN3Q13033 797 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 PPP2R5AQ15172 486 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 OLFML2BQ68BL8 750 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 ZBTB8OSQ8IWT0 167 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 TNS4Q8IZW8 715 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 NOC3LQ8WTT2 800 aaKnown RBP10.34□□□□□ -0.75
UPF2-202ENST00000357604 EGFRP00533 1210 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 GRK4P32298 578 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 MAP3K10Q02779 954 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 ZNF174Q15697 407 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 LRWD1Q9UFC0 647 aa10.34□□□□□ -0.75
UPF2-202ENST00000357604 SPDYE4A6NLX3 237 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 DCDC2CA8MYV0 355 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 NR1I2O75469 434 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 MMP1P03956 469 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 RRAGBQ5VZM2 374 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 IQSEC1Q6DN90 963 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 CMTR1Q8N1G2 835 aaKnown RBP10.33□□□□□ -0.76
UPF2-202ENST00000357604 AGBL1Q96MI9 1066 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 PHF20L1A8MW92 1017 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 ACTN1P12814 892 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 LACTBP83111 547 aaPredicted RBP10.33□□□□□ -0.76
UPF2-202ENST00000357604 SLC51AQ86UW1 340 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 RDM1Q8NG50 284 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms