RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NLRP3Q96P20 1036 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 BRIP1Q9BX63 1249 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 MMRN2Q9H8L6 949 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 STIM2Q9P246 746 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 AKR1B10O60218 316 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 TMC4Q7Z404 712 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 ZIM3Q96PE6 472 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 HSF2BPO75031 334 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 FBXO33Q7Z6M2 555 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 FAM107BQ9H098 131 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 SLC39A2Q9NP94 309 aa24.84■■□□□ 1.57
TRIM28-202ENST00000341753 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.84■■□□□ 1.578e-9■□□□□ 9.2
TRIM28-202ENST00000341753 MYH10P35580 1976 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 NDUFAB1O14561 156 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 OPA1O60313 960 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 CALML3P27482 149 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 INPP5BP32019 993 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 NOC3LQ8WTT2 800 aaKnown RBP24.83■■□□□ 1.57
TRIM28-202ENST00000341753 PCDHA6Q9UN73 950 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 PCDHA8Q9Y5H6 950 aa24.83■■□□□ 1.57
TRIM28-202ENST00000341753 LAMB2P55268 1798 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 FAM153BP0C7A2 387 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 EPHB4P54760 987 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 NAP1L1P55209 391 aaKnown RBP24.83■■□□□ 1.56
TRIM28-202ENST00000341753 FAM153CQ494X1 144 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 C8orf74Q6P047 294 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 HEATR3Q7Z4Q2 680 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 TRIM9Q9C026 710 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 FAM153AQ9UHL3 310 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 HYOU1Q9Y4L1 999 aa24.83■■□□□ 1.56
TRIM28-202ENST00000341753 COL5A3P25940 1745 aaPredicted RBP24.82■■□□□ 1.56
TRIM28-202ENST00000341753 GOLGB1Q14789 3259 aaKnown RBP24.82■■□□□ 1.56
TRIM28-202ENST00000341753 HIBADHP31937 336 aaKnown RBP24.82■■□□□ 1.56
TRIM28-202ENST00000341753 APBA1Q02410 837 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 TXNRD1Q16881 649 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 RRAGAQ7L523 313 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 CABP7Q86V35 215 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 IFT81Q8WYA0 676 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 RCSD1Q6JBY9 416 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 GPATCH11Q8N954 259 aa24.82■■□□□ 1.56
TRIM28-202ENST00000341753 LRRC53A6NM62 1247 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 FGRP09769 529 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 HNRNPH1P31943 449 aaKnown RBP24.81■■□□□ 1.56
TRIM28-202ENST00000341753 RASSF7Q02833 373 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 GFPT1Q06210 699 aaPredicted RBP24.81■■□□□ 1.56
TRIM28-202ENST00000341753 KCNV1Q6PIU1 500 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 CCDC43Q96MW1 224 aaKnown RBP24.81■■□□□ 1.56
TRIM28-202ENST00000341753 ERGIC2Q96RQ1 377 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 SEMA6BQ9H3T3 888 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 NARFQ9UHQ1 456 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 NFU1Q9UMS0 254 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 PLAGL2Q9UPG8 496 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 BICDL2A1A5D9 508 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 CARSP49589 748 aaKnown RBP24.81■■□□□ 1.56
TRIM28-202ENST00000341753 RNASE9P60153 205 aaKnown RBP24.81■■□□□ 1.56
TRIM28-202ENST00000341753 GBP6Q6ZN66 633 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 CPVLQ9H3G5 476 aa24.81■■□□□ 1.56
TRIM28-202ENST00000341753 GLI1P08151 1106 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 MAGEA1P43355 309 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 GUCY2FP51841 1108 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 NNTQ13423 1086 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 KCTD19Q17RG1 926 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-202ENST00000341753 MCTP2Q6DN12 878 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 SUGP1Q8IWZ8 645 aaKnown RBP24.8■■□□□ 1.56
TRIM28-202ENST00000341753 CCDC155Q8N6L0 562 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 KIAA0895Q8NCT3 520 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 ARHGEF1Q92888 912 aaKnown RBP24.8■■□□□ 1.56
TRIM28-202ENST00000341753 MTMR8Q96EF0 704 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 ALS2CR12Q96Q35 445 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 CCNL1Q9UK58 526 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-202ENST00000341753 LOC102724159A0A0B4J2E5 919 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 GUCY1A3Q02108 690 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 PWP2Q15269 919 aaKnown RBP24.8■■□□□ 1.56
TRIM28-202ENST00000341753 FAM114A1Q8IWE2 563 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 CCSER1Q9C0I3 900 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 DCP1AQ9NPI6 582 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-202ENST00000341753 CAPN7Q9Y6W3 813 aa24.8■■□□□ 1.56
TRIM28-202ENST00000341753 FLT1P17948 1338 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 PAFAH1B1P43034 410 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 MNAT1P51948 309 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 SLC35G1Q2M3R5 365 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 SLC10A5Q5PT55 438 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 ZSCAN29Q8IWY8 852 aaPredicted RBP24.79■■□□□ 1.56
TRIM28-202ENST00000341753 TLR10Q9BXR5 811 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 LTBP4Q8N2S1 1624 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 CASZ1Q86V15 1759 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 CNTNAP4Q9C0A0 1308 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 TCP1P17987 556 aaKnown RBP24.79■■□□□ 1.56
TRIM28-202ENST00000341753 EMBQ6PCB8 327 aa24.79■■□□□ 1.56
TRIM28-202ENST00000341753 A0A1W2PQJ5 194 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 MYO1FO00160 1098 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 KIF5BP33176 963 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 SLC1A4P43007 532 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 CDK17Q00537 523 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 LETM2Q2VYF4 491 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 RNPC3Q96LT9 517 aaKnown RBP24.78■■□□□ 1.56
TRIM28-202ENST00000341753 SIK3Q9Y2K2 1263 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 A0A1B0GUL6 1792 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 RPS6KA4O75676 772 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 USP17L8P0C7I0 530 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms