RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 IRAK4Q9NWZ3 460 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 TLR7Q9NYK1 1049 aaKnown RBP6.24□□□□□ -1.41
CSDE1-202ENST00000339438 HMG20BQ9P0W2 317 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 TRIM10Q9UDY6 481 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 TLL2Q9Y6L7 1015 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 NDUFAB1O14561 156 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 FOXN1O15353 648 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 KIF5CO60282 957 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 CHGBP05060 677 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 PYGLP06737 847 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 ALADP13716 330 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 FXR1P51114 621 aaKnown RBP eCLIP6.24□□□□□ -1.411e-6■■■□□ 18.2
CSDE1-202ENST00000339438 MTA1Q13330 715 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 SOGA3Q5TF21 947 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 IFFO2Q5TF58 517 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 STRIP1Q5VSL9 837 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 KLHL23Q8NBE8 558 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 CCT8L2Q96SF2 557 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 ECHDC1Q9NTX5 307 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 HAUS2Q9NVX0 235 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 RALGAPA2Q2PPJ7 1873 aa6.24□□□□□ -1.41
CSDE1-202ENST00000339438 ZNF233A6NK53 670 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SPDYE3A6NKU9 549 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 H3BQV1 296 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 MFAP3LO75121 409 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 PPFIA3O75145 1194 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ATP6V1G2O95670 118 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ATP1A1P05023 1023 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 GUCY1A2P33402 732 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 PRPHP41219 470 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SEC24CP53992 1094 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 RPS8P62241 208 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 GUCY1A3Q02108 690 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 NOL9Q5SY16 702 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 CDAN1Q8IWY9 1227 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ELOA2Q8IYF1 753 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 IQCKQ8N0W5 287 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SH2D3CQ8N5H7 860 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SPATA20Q8TB22 786 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 MAP3K14Q99558 947 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 IDI2Q9BXS1 227 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 FAM198AQ9UFP1 575 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 FAM184BQ9ULE4 1060 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 CORO1CQ9ULV4 474 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 TRPC6Q9Y210 931 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ZBTB12Q9Y330 459 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ZMYM6O95789 1325 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 MYH7BA7E2Y1 1941 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 C5orf60A6NFR6 353 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 AKR1B15C9JRZ8 316 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SRGAP2O75044 1071 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 FAM107AO95990 144 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 RPS12P25398 132 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 RDXP35241 583 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 GCKP35557 465 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ELF3P78545 371 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 UBE4AQ14139 1066 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 QPCTQ16769 361 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 AOC3Q16853 763 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 FKBP1CQ5VVH2 108 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ZNF594Q96JF6 807 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ZDHHC15Q96MV8 337 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 NUCKS1Q9H1E3 243 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SAMSN1Q9NSI8 373 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SUGT1Q9Y2Z0 365 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 H0YIN7 160 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SH2B2O14492 632 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SPTLC2O15270 562 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 PPIP5K2O43314 1243 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 MCAMP43121 646 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 EVX2Q03828 476 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 E2F5Q15329 346 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 LONRF3Q496Y0 759 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 HSP90AA4PQ58FG1 418 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 RSBN1LQ6PCB5 846 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 USP50Q70EL3 339 aaPredicted RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 TRIM74Q86UV6 250 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 TRIM73Q86UV7 250 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 C1orf131Q8NDD1 294 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 CCDC148Q8NFR7 591 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ENOX1Q8TC92 643 aaKnown RBP6.23□□□□□ -1.41
CSDE1-202ENST00000339438 KCNG4Q8TDN1 519 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 CCT6BQ92526 530 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 STAMBPL1Q96FJ0 436 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 NEK1Q96PY6 1258 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 POLD4Q9HCU8 107 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 SLC5A4Q9NY91 659 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ZNRF3Q9ULT6 936 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 PCDHGA4Q9Y5G9 962 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 VCANP13611 3396 aa6.23□□□□□ -1.41
CSDE1-202ENST00000339438 ENO4A6NNW6 628 aa6.22□□□□□ -1.41
CSDE1-202ENST00000339438 AHCYL1O43865 530 aa6.22□□□□□ -1.41
CSDE1-202ENST00000339438 DNAJC8O75937 253 aaPredicted RBP6.22□□□□□ -1.41
CSDE1-202ENST00000339438 RPSAP08865 295 aaKnown RBP6.22□□□□□ -1.41
CSDE1-202ENST00000339438 POLD1P28340 1107 aa6.22□□□□□ -1.41
CSDE1-202ENST00000339438 CTGFP29279 349 aa6.22□□□□□ -1.41
CSDE1-202ENST00000339438 APBA1Q02410 837 aa6.22□□□□□ -1.41
CSDE1-202ENST00000339438 ITGB3BPQ13352 177 aaPredicted RBP6.22□□□□□ -1.41
CSDE1-202ENST00000339438 RESP18Q5W5W9 173 aa6.22□□□□□ -1.41
CSDE1-202ENST00000339438 NLRP14Q86W24 1093 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms