RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PPP4R3CPQ6ZMV5 832 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 MRPL47Q9HD33 250 aaKnown RBP15.45■□□□□ 0.06
COL7A1-201ENST00000328333 FANCAO15360 1455 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 CD19P15391 556 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 CLCN6P51797 869 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 E2F5Q15329 346 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 TMTC4Q5T4D3 741 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 CACTINQ8WUQ7 758 aaKnown RBP15.45■□□□□ 0.06
COL7A1-201ENST00000328333 DBNLQ9UJU6 430 aaKnown RBP15.45■□□□□ 0.06
COL7A1-201ENST00000328333 WDR7Q9Y4E6 1490 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 STXBP3O00186 592 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 BSPRYQ5W0U4 402 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 ZNF713Q8N859 430 aaPredicted RBP15.45■□□□□ 0.06
COL7A1-201ENST00000328333 ENOX1Q8TC92 643 aaKnown RBP15.45■□□□□ 0.06
COL7A1-201ENST00000328333 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.45■□□□□ 0.06
COL7A1-201ENST00000328333 GRAMD1AQ96CP6 724 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 MPP6Q9NZW5 540 aa15.45■□□□□ 0.06
COL7A1-201ENST00000328333 GPAA1O43292 621 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SCG2P13521 617 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 MRPL28Q13084 256 aaKnown RBP15.44■□□□□ 0.06
COL7A1-201ENST00000328333 BZW1Q7L1Q6 419 aaKnown RBP15.44■□□□□ 0.06
COL7A1-201ENST00000328333 PPARGP37231 505 aaPredicted RBP15.44■□□□□ 0.06
COL7A1-201ENST00000328333 MORF4L2Q15014 288 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SGO2Q562F6 1265 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 PDIK1LQ8N165 341 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 KRT82Q9NSB4 513 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 CDC37Q16543 378 aaPredicted RBP15.44■□□□□ 0.06
COL7A1-201ENST00000328333 EXOC3L4Q17RC7 722 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 MAML1Q92585 1016 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 POLKQ9UBT6 870 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 ZNF148Q9UQR1 794 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 ABCB4P21439 1286 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 KIAA0232Q92628 1395 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 TFCP2Q12800 502 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 IQCB1Q15051 598 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 CHST3Q7LGC8 479 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SUN2Q9UH99 717 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 BLOC1S6Q9UL45 172 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 MAPK8IP1Q9UQF2 711 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SNX5Q9Y5X3 404 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 KIF20BQ96Q89 1820 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 ADCY9O60503 1353 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 TARSL2A2RTX5 802 aaKnown RBP15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SLC13A4Q9UKG4 626 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SLC1A4P43007 532 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 PCGF5Q86SE9 256 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 SPTLC3Q9NUV7 552 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 ATP8A1Q9Y2Q0 1164 aa15.44■□□□□ 0.06
COL7A1-201ENST00000328333 ZNF233A6NK53 670 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 RPN1P04843 607 aaKnown RBP15.43■□□□□ 0.06
COL7A1-201ENST00000328333 LONRF3Q496Y0 759 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 MYH3P11055 1940 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 TFAP4Q01664 338 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 LRMPQ12912 555 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 BBS5Q8N3I7 341 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 ARPP21Q9UBL0 812 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-201ENST00000328333 H0Y626 953 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 GAS7O60861 476 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 MBD4O95243 580 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 TRIM16O95361 564 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 DR1Q01658 176 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 CENPUQ71F23 418 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 ZBTB12Q9Y330 459 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-201ENST00000328333 SGK1O00141 431 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 SENP1Q9P0U3 644 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 STAT2P52630 851 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 GRIN1Q05586 938 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 MAML3Q96JK9 1138 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 GADD45BO75293 160 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-201ENST00000328333 PLIN2Q99541 437 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 DZIP3Q86Y13 1208 aaKnown RBP15.43■□□□□ 0.06
COL7A1-201ENST00000328333 EPB41L5Q9HCM4 733 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 PTK2Q05397 1052 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 SLC30A9Q6PML9 568 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 RAPH1Q70E73 1250 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 ADAM21Q9UKJ8 722 aa15.43■□□□□ 0.06
COL7A1-201ENST00000328333 TPTE2Q6XPS3 522 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 GPBP1Q86WP2 473 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 TRPC1P48995 793 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 MRPS15P82914 257 aaKnown RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 CABP7Q86V35 215 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PROCA1Q8NCQ7 364 aaPredicted RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 EXOC8Q8IYI6 725 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 M0QZ92 97 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 GAP43P17677 238 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 NFKBIAP25963 317 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 IFNAR2P48551 515 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 ALCAMQ13740 583 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 TNNI3KQ59H18 835 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 COPS6Q7L5N1 327 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 STX19Q8N4C7 294 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 MAGOHBQ96A72 148 aaKnown RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PICK1Q9NRD5 415 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 RWDD2AQ9UIY3 292 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 CDV3Q9UKY7 258 aaKnown RBP15.42■□□□□ 0.06
COL7A1-201ENST00000328333 ZBTB21Q9ULJ3 1066 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PPME1Q9Y570 386 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 FPGT-TNNI3KV9GXZ4 949 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PCDH11XQ9BZA7 1347 aa15.42■□□□□ 0.06
COL7A1-201ENST00000328333 PCDH11YQ9BZA8 1340 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms