RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 TCP11X2Q5H9J9 407 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 KIF18AQ8NI77 898 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 DCAF4Q8WV16 495 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 LARP4BQ92615 738 aaKnown RBP12.86□□□□□ -0.35
CUX1-202ENST00000292538 MRIQ9BWK5 157 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 LZTFL1Q9NQ48 299 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 PIM2Q9P1W9 311 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 COL11A2P13942 1736 aaPredicted RBP12.86□□□□□ -0.35
CUX1-202ENST00000292538 NPHP3-ACAD11A0A0J9YXS1 232 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 E9PMD0 336 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 hCG_1984214I3L0E3 225 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 KLRC4O43908 158 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 ENTPD3O75355 529 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 CYP4A11Q02928 519 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 NCAPH2Q6IBW4 605 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 ADSSL1Q8N142 457 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 ZNF713Q8N859 430 aaPredicted RBP12.86□□□□□ -0.35
CUX1-202ENST00000292538 HAS1Q92839 578 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 CTAGE1Q96RT6 745 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 ZNRF3Q9ULT6 936 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 FZD1Q9UP38 647 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 SCN9AQ15858 1988 aa12.86□□□□□ -0.35
CUX1-202ENST00000292538 DYNC1I1O14576 645 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 CHMP2AO43633 222 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 KRT18P05783 430 aaKnown RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 COPB1P53618 953 aaKnown RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 GLIS3Q8NEA6 775 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 P2RX7Q99572 595 aaKnown RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 ARHGEF10LQ9HCE6 1279 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 HOMER2Q9NSB8 354 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 PKD2L1Q9P0L9 805 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 PRR12Q9ULL5 1215 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 POTEB3A0JP26 581 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 POTECB2RU33 542 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 B4DLN1 442 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 VIL1P09327 827 aaKnown RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 TPM1P09493 284 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 STAT2P52630 851 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 CDKAL1Q5VV42 579 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 ANKRD40Q6AI12 368 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 POTEBQ6S5H4 581 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 SAMD7Q7Z3H4 446 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 CPXCR1Q8N123 301 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 DDX12PQ92771 950 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 MKL1Q969V6 931 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 PNMA5Q96PV4 448 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 MORC2Q9Y6X9 1032 aaPredicted RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 MEIS2O14770 477 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 MTIF2P46199 727 aaKnown RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 FXR1P51114 621 aaKnown RBP eCLIP12.85□□□□□ -0.35
CUX1-202ENST00000292538 FKBP1AP62942 108 aaKnown RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 ARHGAP4P98171 946 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 TBC1D10BQ4KMP7 808 aaPredicted RBP12.85□□□□□ -0.35
CUX1-202ENST00000292538 PPP4R3BQ5MIZ7 849 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 BLOC1S4Q9NUP1 217 aa12.85□□□□□ -0.35
CUX1-202ENST00000292538 MYO3BQ8WXR4 1341 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 WNT10BO00744 389 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 TERF1P54274 439 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 DALRD3Q5D0E6 543 aaKnown RBP12.84□□□□□ -0.35
CUX1-202ENST00000292538 APTXQ7Z2E3 356 aaKnown RBP12.84□□□□□ -0.35
CUX1-202ENST00000292538 NELFCDQ8IXH7 590 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 DLEC1Q9Y238 1755 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 A0A0U1RQJ8 604 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 RHOBTB3O94955 611 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 GIMAP8Q8ND71 665 aaPredicted RBP12.84□□□□□ -0.35
CUX1-202ENST00000292538 FAM151AQ8WW52 585 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 ATRIPQ8WXE1 791 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 IRX2Q9BZI1 471 aaPredicted RBP12.84□□□□□ -0.35
CUX1-202ENST00000292538 ZBTB21Q9ULJ3 1066 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 PPP2R2CQ9Y2T4 447 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 PAXBP1Q9Y5B6 917 aa12.84□□□□□ -0.35
CUX1-202ENST00000292538 ASTN2O75129 1339 aaPredicted RBP12.84□□□□□ -0.35
CUX1-202ENST00000292538 POTEFA5A3E0 1075 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 RNF225M0QZC1 329 aaPredicted RBP12.83□□□□□ -0.36
CUX1-202ENST00000292538 NKRFO15226 690 aaKnown RBP eCLIP12.83□□□□□ -0.366e-7■■■□□ 16.5
CUX1-202ENST00000292538 URI1O94763 535 aaPredicted RBP12.83□□□□□ -0.36
CUX1-202ENST00000292538 POTEIP0CG38 1075 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 KLK7P49862 253 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 GNG11P61952 73 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 RASA3Q14644 834 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 R3HDM1Q15032 1099 aaKnown RBP12.83□□□□□ -0.36
CUX1-202ENST00000292538 POTEGQ6S5H5 508 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 POTEEQ6S8J3 1075 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 NYAP1Q6ZVC0 841 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 TAOK3Q9H2K8 898 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 PSDA5PKW4 1024 aaPredicted RBP12.83□□□□□ -0.36
CUX1-202ENST00000292538 H7C1D1 291 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 ARHGAP6O43182 974 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 CLK2P49760 499 aaKnown RBP12.83□□□□□ -0.36
CUX1-202ENST00000292538 PRKG1Q13976 671 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 CIAPIN1Q6FI81 312 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 ZNF341Q9BYN7 854 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 LTBP1Q14766 1721 aa12.83□□□□□ -0.36
CUX1-202ENST00000292538 FAM86B1E9PN63 330 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 GYPCP04921 128 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 FAM86B2P0C5J1 330 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 POLD1P28340 1107 aa12.82□□□□□ -0.36
CUX1-202ENST00000292538 FXR2P51116 673 aaKnown RBP eCLIP12.82□□□□□ -0.36
CUX1-202ENST00000292538 TBX2Q13207 712 aaPredicted RBP12.82□□□□□ -0.36
CUX1-202ENST00000292538 PABPC4Q13310 644 aaKnown RBP eCLIP12.82□□□□□ -0.362e-20■■■■■ 62.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms