RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 WDR70Q9NW82 654 aa4.69□□□□□ -1.66
SCN1A-221ENST00000641996 STK11IPQ8N1F8 1099 aa4.69□□□□□ -1.66
SCN1A-221ENST00000641996 TNNT3P45378 269 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-221ENST00000641996 CC2D1BQ5T0F9 858 aaKnown RBP4.68□□□□□ -1.66
SCN1A-221ENST00000641996 CREBRFQ8IUR6 639 aa4.68□□□□□ -1.66
SCN1A-221ENST00000641996 TMCO4Q5TGY1 634 aa4.68□□□□□ -1.66
SCN1A-221ENST00000641996 ATRXP46100 2492 aa4.68□□□□□ -1.66
SCN1A-221ENST00000641996 ZBTB12Q9Y330 459 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-221ENST00000641996 CLGNO14967 610 aa4.66□□□□□ -1.66
SCN1A-221ENST00000641996 DIEXFQ68CQ4 756 aaKnown RBP4.66□□□□□ -1.66
SCN1A-221ENST00000641996 ARID4AP29374 1257 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-221ENST00000641996 MPNDQ8N594 471 aa4.66□□□□□ -1.66
SCN1A-221ENST00000641996 RRP9O43818 475 aaKnown RBP4.66□□□□□ -1.66
SCN1A-221ENST00000641996 FBXW7Q969H0 707 aa4.65□□□□□ -1.67
SCN1A-221ENST00000641996 ANP32CO43423 234 aa4.65□□□□□ -1.67
SCN1A-221ENST00000641996 ZHX1Q9UKY1 873 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-221ENST00000641996 POLD1P28340 1107 aa4.64□□□□□ -1.67
SCN1A-221ENST00000641996 ZBTB22O15209 634 aa4.64□□□□□ -1.67
SCN1A-221ENST00000641996 RGS3P49796 1198 aa4.64□□□□□ -1.67
SCN1A-221ENST00000641996 TNNT1P13805 278 aa4.64□□□□□ -1.67
SCN1A-221ENST00000641996 ARMCX6Q7L4S7 300 aa4.63□□□□□ -1.67
SCN1A-221ENST00000641996 CCDC27Q2M243 656 aa4.63□□□□□ -1.67
SCN1A-221ENST00000641996 WDR78Q5VTH9 848 aa4.63□□□□□ -1.67
SCN1A-221ENST00000641996 PRDM16Q9HAZ2 1276 aa4.62□□□□□ -1.67
SCN1A-221ENST00000641996 NOP58Q9Y2X3 529 aaKnown RBP4.62□□□□□ -1.67
SCN1A-221ENST00000641996 CIZ1Q9ULV3 898 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-221ENST00000641996 AXDND1Q5T1B0 1012 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-221ENST00000641996 ERICH4A6NGS2 130 aa4.62□□□□□ -1.67
SCN1A-221ENST00000641996 ZNF692Q9BU19 519 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-221ENST00000641996 NAP1L1P55209 391 aaKnown RBP4.61□□□□□ -1.67
SCN1A-221ENST00000641996 CCDC97Q96F63 343 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-221ENST00000641996 SMARCA5O60264 1052 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-221ENST00000641996 RBM26Q5T8P6 1007 aaKnown RBP4.61□□□□□ -1.67
SCN1A-221ENST00000641996 CDCA8Q53HL2 280 aa4.61□□□□□ -1.67
SCN1A-221ENST00000641996 NECTIN2Q92692 538 aa4.61□□□□□ -1.67
SCN1A-221ENST00000641996 NPM3O75607 178 aaKnown RBP4.6□□□□□ -1.67
SCN1A-221ENST00000641996 GOLIM4O00461 696 aa4.6□□□□□ -1.67
SCN1A-221ENST00000641996 PNNQ9H307 717 aaKnown RBP4.6□□□□□ -1.67
SCN1A-221ENST00000641996 CSB-PGBD3P0DP91 1061 aa4.6□□□□□ -1.67
SCN1A-221ENST00000641996 ITGAEP38570 1179 aa4.6□□□□□ -1.67
SCN1A-221ENST00000641996 SETQ01105 290 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-221ENST00000641996 MCCP23508 829 aa4.6□□□□□ -1.67
SCN1A-221ENST00000641996 FAM43BQ6ZT52 329 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-221ENST00000641996 DNAJC2Q99543 621 aaKnown RBP4.59□□□□□ -1.67
SCN1A-221ENST00000641996 PEX14O75381 377 aa4.59□□□□□ -1.67
SCN1A-221ENST00000641996 PLEKHD1A6NEE1 506 aa4.59□□□□□ -1.67
SCN1A-221ENST00000641996 NEFHP12036 1026 aa4.59□□□□□ -1.68
SCN1A-221ENST00000641996 MRVI1Q9Y6F6 885 aa4.59□□□□□ -1.68
SCN1A-221ENST00000641996 KIF4AO95239 1232 aa4.58□□□□□ -1.68
SCN1A-221ENST00000641996 LMOD3Q0VAK6 560 aa4.58□□□□□ -1.68
SCN1A-221ENST00000641996 MPHOSPH10O00566 681 aaKnown RBP4.58□□□□□ -1.68
SCN1A-221ENST00000641996 KAT6AQ92794 2004 aa4.58□□□□□ -1.68
SCN1A-221ENST00000641996 ZNF622Q969S3 477 aaKnown RBP eCLIP4.58□□□□□ -1.68
SCN1A-221ENST00000641996 MYCNP04198 464 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-221ENST00000641996 GTF2E1P29083 439 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-221ENST00000641996 ZNF513Q8N8E2 541 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-221ENST00000641996 HMGN5P82970 282 aaKnown RBP4.57□□□□□ -1.68
SCN1A-221ENST00000641996 HSP90AB4PQ58FF6 505 aa4.57□□□□□ -1.68
SCN1A-221ENST00000641996 ZBTB47Q9UFB7 747 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-221ENST00000641996 WWC3Q9ULE0 1092 aa4.57□□□□□ -1.68
SCN1A-221ENST00000641996 SSR1P43307 286 aaKnown RBP4.56□□□□□ -1.68
SCN1A-221ENST00000641996 GORABQ5T7V8 394 aa4.56□□□□□ -1.68
SCN1A-221ENST00000641996 NPM1P06748 294 aaKnown RBP eCLIP4.56□□□□□ -1.68
SCN1A-221ENST00000641996 SPRYD3Q8NCJ5 442 aa4.56□□□□□ -1.68
SCN1A-221ENST00000641996 MARCH6O60337 910 aa4.56□□□□□ -1.68
SCN1A-221ENST00000641996 RBM19Q9Y4C8 960 aaKnown RBP4.56□□□□□ -1.68
SCN1A-221ENST00000641996 BANK1Q8NDB2 785 aa4.56□□□□□ -1.68
SCN1A-221ENST00000641996 STK24Q9Y6E0 443 aa4.56□□□□□ -1.68
SCN1A-221ENST00000641996 HSCBQ8IWL3 235 aa4.56□□□□□ -1.68
SCN1A-221ENST00000641996 PES1O00541 588 aaKnown RBP4.55□□□□□ -1.68
SCN1A-221ENST00000641996 L1TD1Q5T7N2 865 aaKnown RBP4.55□□□□□ -1.68
SCN1A-221ENST00000641996 TAF3Q5VWG9 929 aa4.55□□□□□ -1.68
SCN1A-221ENST00000641996 GOLGA6L6A8MZA4 724 aa4.55□□□□□ -1.68
SCN1A-221ENST00000641996 SH3BP5O60239 455 aa4.55□□□□□ -1.68
SCN1A-221ENST00000641996 MFAP1P55081 439 aaKnown RBP4.55□□□□□ -1.68
SCN1A-221ENST00000641996 GOLGA6L22H0YM25 854 aa4.54□□□□□ -1.68
SCN1A-221ENST00000641996 CHGAP10645 457 aaKnown RBP4.54□□□□□ -1.68
SCN1A-221ENST00000641996 CCDC82Q8N4S0 544 aa4.54□□□□□ -1.68
SCN1A-221ENST00000641996 ZNF771Q7L3S4 317 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-221ENST00000641996 STAC3Q96MF2 364 aa4.53□□□□□ -1.68
SCN1A-221ENST00000641996 KCNG1Q9UIX4 513 aa4.53□□□□□ -1.68
SCN1A-221ENST00000641996 EXOC8Q8IYI6 725 aa4.53□□□□□ -1.68
SCN1A-221ENST00000641996 PDE6BP35913 854 aa4.53□□□□□ -1.68
SCN1A-221ENST00000641996 RGL3Q3MIN7 710 aa4.53□□□□□ -1.68
SCN1A-221ENST00000641996 CGNQ9P2M7 1197 aaKnown RBP4.53□□□□□ -1.68
SCN1A-221ENST00000641996 SUPT16HQ9Y5B9 1047 aaKnown RBP4.53□□□□□ -1.68
SCN1A-221ENST00000641996 ZRSR2Q15696 482 aaKnown RBP4.53□□□□□ -1.68
SCN1A-221ENST00000641996 DHX16O60231 1041 aaKnown RBP4.52□□□□□ -1.69
SCN1A-221ENST00000641996 MYH16Q9H6N6 1097 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 GOLGA6L1Q8N7Z2 621 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 CHMP3Q9Y3E7 222 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 ECM2O94769 699 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-221ENST00000641996 CASC1Q6TDU7 716 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 CTDP1Q9Y5B0 961 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-221ENST00000641996 TCERG1O14776 1098 aaKnown RBP4.52□□□□□ -1.69
SCN1A-221ENST00000641996 RBM27Q9P2N5 1060 aaKnown RBP4.52□□□□□ -1.69
SCN1A-221ENST00000641996 ANKRD62A6NC57 917 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 BRD1O95696 1058 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 CCDC181Q5TID7 509 aa4.52□□□□□ -1.69
SCN1A-221ENST00000641996 SPINK5Q9NQ38 1064 aaPredicted RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms