RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RGS20O76081 388 aa3.25□□□□□ -1.89
VPS35-212ENST00000640313 VASPP50552 380 aaPredicted RBP3.25□□□□□ -1.89
VPS35-212ENST00000640313 FKBP8Q14318 412 aa3.25□□□□□ -1.89
VPS35-212ENST00000640313 POTEEQ6S8J3 1075 aa3.25□□□□□ -1.89
VPS35-212ENST00000640313 KHSRPQ92945 711 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS35-212ENST00000640313 TK2O00142 265 aa3.22□□□□□ -1.89
VPS35-212ENST00000640313 IFFO2Q5TF58 517 aa3.22□□□□□ -1.89
VPS35-212ENST00000640313 ADGRD1Q6QNK2 874 aa3.22□□□□□ -1.89
VPS35-212ENST00000640313 MS4A4AQ96JQ5 239 aa3.22□□□□□ -1.89
VPS35-212ENST00000640313 AXIN2Q9Y2T1 843 aa3.22□□□□□ -1.89
VPS35-212ENST00000640313 ARHGAP33O14559 1287 aa3.21□□□□□ -1.9
VPS35-212ENST00000640313 HRO43593 1189 aa3.21□□□□□ -1.9
VPS35-212ENST00000640313 SLC34A2O95436 690 aa3.21□□□□□ -1.9
VPS35-212ENST00000640313 TRIM41Q8WV44 630 aa3.21□□□□□ -1.9
VPS35-212ENST00000640313 SPOCK2Q92563 424 aa3.21□□□□□ -1.9
VPS35-212ENST00000640313 IRX2Q9BZI1 471 aaPredicted RBP3.21□□□□□ -1.9
VPS35-212ENST00000640313 CIZ1Q9ULV3 898 aaPredicted RBP3.21□□□□□ -1.9
VPS35-212ENST00000640313 LHX6Q9UPM6 363 aa3.21□□□□□ -1.9
VPS35-212ENST00000640313 KIF3CO14782 793 aa3.2□□□□□ -1.9
VPS35-212ENST00000640313 NUDT7P0C024 238 aa3.2□□□□□ -1.9
VPS35-212ENST00000640313 PSDA5PKW4 1024 aaPredicted RBP3.19□□□□□ -1.9
VPS35-212ENST00000640313 PHF8Q9UPP1 1060 aa3.19□□□□□ -1.9
VPS35-212ENST00000640313 PCDHGA4Q9Y5G9 962 aa3.19□□□□□ -1.9
VPS35-212ENST00000640313 IFNLR1Q8IU57 520 aaPredicted RBP3.18□□□□□ -1.9
VPS35-212ENST00000640313 KDM4FA0A1W2PPD8 638 aa3.17□□□□□ -1.9
VPS35-212ENST00000640313 NLRP6P59044 892 aa3.17□□□□□ -1.9
VPS35-212ENST00000640313 A0A0G2JS52 829 aa3.16□□□□□ -1.9
VPS35-212ENST00000640313 C2orf72A6NCS6 295 aa3.16□□□□□ -1.9
VPS35-212ENST00000640313 DMRTA1Q5VZB9 504 aa3.16□□□□□ -1.9
VPS35-212ENST00000640313 FBXO22Q8NEZ5 403 aa3.16□□□□□ -1.9
VPS35-212ENST00000640313 KCTD12Q96CX2 325 aaKnown RBP3.16□□□□□ -1.9
VPS35-212ENST00000640313 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.15□□□□□ -1.91
VPS35-212ENST00000640313 RIOK3O14730 519 aaKnown RBP3.15□□□□□ -1.91
VPS35-212ENST00000640313 ZFP91Q96JP5 570 aaPredicted RBP3.15□□□□□ -1.91
VPS35-212ENST00000640313 STAC3Q96MF2 364 aa3.15□□□□□ -1.91
VPS35-212ENST00000640313 VGFO15240 615 aaPredicted RBP3.14□□□□□ -1.91
VPS35-212ENST00000640313 PSEN2P49810 448 aa3.14□□□□□ -1.91
VPS35-212ENST00000640313 PTPN5P54829 565 aa3.13□□□□□ -1.91
VPS35-212ENST00000640313 PTCD2Q8WV60 388 aaKnown RBP3.13□□□□□ -1.91
VPS35-212ENST00000640313 PPP4R3BQ5MIZ7 849 aa3.12□□□□□ -1.91
VPS35-212ENST00000640313 RNF25Q96BH1 459 aaPredicted RBP3.12□□□□□ -1.91
VPS35-212ENST00000640313 SLC4A5Q9BY07 1137 aa3.12□□□□□ -1.91
VPS35-212ENST00000640313 VPS9D1Q9Y2B5 631 aa3.12□□□□□ -1.91
VPS35-212ENST00000640313 BHMG1C9JSJ3 638 aaPredicted RBP3.11□□□□□ -1.91
VPS35-212ENST00000640313 THSD4Q6ZMP0 1018 aa3.11□□□□□ -1.91
VPS35-212ENST00000640313 Q6ZNB5 142 aa3.11□□□□□ -1.91
VPS35-212ENST00000640313 TMC2Q8TDI7 906 aa3.11□□□□□ -1.91
VPS35-212ENST00000640313 MFRPQ9BY79 579 aa3.11□□□□□ -1.91
VPS35-212ENST00000640313 KCNH8Q96L42 1107 aa3.1□□□□□ -1.91
VPS35-212ENST00000640313 ITGBL1O95965 494 aaPredicted RBP3.09□□□□□ -1.91
VPS35-212ENST00000640313 LAPTM4AQ15012 233 aa3.09□□□□□ -1.91
VPS35-212ENST00000640313 KCNK17Q96T54 332 aa3.09□□□□□ -1.91
VPS35-212ENST00000640313 TAOK2Q9UL54 1235 aa3.09□□□□□ -1.91
VPS35-212ENST00000640313 TBC1D12O60347 775 aa3.08□□□□□ -1.92
VPS35-212ENST00000640313 BCL11BQ9C0K0 894 aaPredicted RBP3.08□□□□□ -1.92
VPS35-212ENST00000640313 LCE2BO14633 110 aa3.07□□□□□ -1.92
VPS35-212ENST00000640313 FOXK1P85037 733 aa3.07□□□□□ -1.92
VPS35-212ENST00000640313 TRAF7Q6Q0C0 670 aa3.07□□□□□ -1.92
VPS35-212ENST00000640313 WNT2BQ93097 391 aa3.07□□□□□ -1.92
VPS35-212ENST00000640313 BCL2L12Q9HB09 334 aa3.07□□□□□ -1.92
VPS35-212ENST00000640313 GOLGA8CPA6NN73 597 aa3.06□□□□□ -1.92
VPS35-212ENST00000640313 MRPL50Q8N5N7 158 aaKnown RBP3.06□□□□□ -1.92
VPS35-212ENST00000640313 STK24Q9Y6E0 443 aa3.06□□□□□ -1.92
VPS35-212ENST00000640313 PLPP6Q8IY26 295 aa3.05□□□□□ -1.92
VPS35-212ENST00000640313 ZBED2Q9BTP6 218 aa3.05□□□□□ -1.92
VPS35-212ENST00000640313 GPHNQ9NQX3 736 aaPredicted RBP3.05□□□□□ -1.92
VPS35-212ENST00000640313 PTPREP23469 700 aa3.04□□□□□ -1.92
VPS35-212ENST00000640313 NYAP1Q6ZVC0 841 aa3.04□□□□□ -1.92
VPS35-212ENST00000640313 NBPF3Q9H094 633 aa3.04□□□□□ -1.92
VPS35-212ENST00000640313 STK25O00506 426 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 GFRA3O60609 400 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 PPP1R37O75864 691 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 FOSBP53539 338 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 KCNC4Q03721 635 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 ZNF454Q8N9F8 522 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 OXER1Q8TDS5 423 aa3.03□□□□□ -1.92
VPS35-212ENST00000640313 DSG2Q14126 1118 aa3.02□□□□□ -1.93
VPS35-212ENST00000640313 ANO8Q9HCE9 1232 aaPredicted RBP3.02□□□□□ -1.93
VPS35-212ENST00000640313 NRG2O14511 850 aaPredicted RBP3.01□□□□□ -1.93
VPS35-212ENST00000640313 ANKK1Q8NFD2 765 aa3.01□□□□□ -1.93
VPS35-212ENST00000640313 RABGEF1Q9UJ41 708 aa3.01□□□□□ -1.93
VPS35-212ENST00000640313 SOWAHBA6NEL2 793 aa3□□□□□ -1.93
VPS35-212ENST00000640313 ZNF787Q6DD87 383 aa3□□□□□ -1.93
VPS35-212ENST00000640313 LAPTM4BQ86VI4 370 aa3□□□□□ -1.93
VPS35-212ENST00000640313 JPH4Q96JJ6 628 aa3□□□□□ -1.93
VPS35-212ENST00000640313 PPP1R3GB7ZBB8 358 aa2.99□□□□□ -1.93
VPS35-212ENST00000640313 ZDHHC16Q969W1 377 aa2.99□□□□□ -1.93
VPS35-212ENST00000640313 ZNF775Q96BV0 537 aaPredicted RBP2.99□□□□□ -1.93
VPS35-212ENST00000640313 ADAM33Q9BZ11 813 aa2.99□□□□□ -1.93
VPS35-212ENST00000640313 ONECUT3O60422 494 aaPredicted RBP2.98□□□□□ -1.93
VPS35-212ENST00000640313 BCAMP50895 628 aa2.98□□□□□ -1.93
VPS35-212ENST00000640313 WBP1LQ9NX94 342 aa2.98□□□□□ -1.93
VPS35-212ENST00000640313 V9GY48 417 aaPredicted RBP2.98□□□□□ -1.93
VPS35-212ENST00000640313 UPF1Q92900 1129 aaKnown RBP eCLIP2.97□□□□□ -1.93
VPS35-212ENST00000640313 ZFRQ96KR1 1074 aaKnown RBP2.97□□□□□ -1.93
VPS35-212ENST00000640313 PRKD2Q9BZL6 878 aa2.97□□□□□ -1.93
VPS35-212ENST00000640313 TSR3Q9UJK0 312 aaKnown RBP2.96□□□□□ -1.94
VPS35-212ENST00000640313 EVI5O60447 810 aa2.95□□□□□ -1.94
VPS35-212ENST00000640313 PROX2Q3B8N5 592 aa2.95□□□□□ -1.94
VPS35-212ENST00000640313 CRISPLD2Q9H0B8 497 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms