RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CDC42BPBQ9Y5S2 1711 aa15.9■□□□□ 0.14
CLN3-248ENST00000636355 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.89■□□□□ 0.13
CLN3-248ENST00000636355 ARHGEF5Q12774 1597 aa15.89■□□□□ 0.13
CLN3-248ENST00000636355 HFM1A2PYH4 1435 aa15.88■□□□□ 0.13
CLN3-248ENST00000636355 ZEB1P37275 1124 aaPredicted RBP15.88■□□□□ 0.13
CLN3-248ENST00000636355 SHANK2Q9UPX8 1470 aa15.88■□□□□ 0.13
CLN3-248ENST00000636355 ABCA9Q8IUA7 1624 aa15.87■□□□□ 0.13
CLN3-248ENST00000636355 ARID3CA6NKF2 412 aa15.87■□□□□ 0.13
CLN3-248ENST00000636355 FAM50AQ14320 339 aaKnown RBP15.87■□□□□ 0.13
CLN3-248ENST00000636355 PLEKHH2Q8IVE3 1493 aa15.85■□□□□ 0.13
CLN3-248ENST00000636355 ROCK1Q13464 1354 aa15.84■□□□□ 0.13
CLN3-248ENST00000636355 DAPK1P53355 1430 aa15.84■□□□□ 0.13
CLN3-248ENST00000636355 SETD5Q9C0A6 1442 aa15.84■□□□□ 0.13
CLN3-248ENST00000636355 MAPKBP1O60336 1514 aa15.84■□□□□ 0.13
CLN3-248ENST00000636355 CLSPNQ9HAW4 1339 aa15.83■□□□□ 0.12
CLN3-248ENST00000636355 ADGRL2O95490 1459 aa15.83■□□□□ 0.12
CLN3-248ENST00000636355 SAMD9LQ8IVG5 1584 aa15.83■□□□□ 0.12
CLN3-248ENST00000636355 ACIN1Q9UKV3 1341 aaKnown RBP15.82■□□□□ 0.12
CLN3-248ENST00000636355 CFAP74Q9C0B2 1584 aa15.81■□□□□ 0.12
CLN3-248ENST00000636355 MAST1Q9Y2H9 1570 aa15.8■□□□□ 0.12
CLN3-248ENST00000636355 ARHGAP5Q13017 1502 aa15.8■□□□□ 0.12
CLN3-248ENST00000636355 CFDP1Q9UEE9 299 aaPredicted RBP15.8■□□□□ 0.12
CLN3-248ENST00000636355 PTPRKQ15262 1439 aa15.79■□□□□ 0.12
CLN3-248ENST00000636355 ASXL2Q76L83 1435 aa15.79■□□□□ 0.12
CLN3-248ENST00000636355 KIAA1107Q9UPP5 1409 aa15.78■□□□□ 0.12
CLN3-248ENST00000636355 RAB3GAP2Q9H2M9 1393 aa15.78■□□□□ 0.12
CLN3-248ENST00000636355 ABCC1P33527 1531 aa15.78■□□□□ 0.12
CLN3-248ENST00000636355 ABCC5O15440 1437 aa15.77■□□□□ 0.12
CLN3-248ENST00000636355 PLCH2O75038 1416 aa15.77■□□□□ 0.12
CLN3-248ENST00000636355 NAIPQ13075 1403 aa15.77■□□□□ 0.12
CLN3-248ENST00000636355 CCDC141Q6ZP82 1450 aa15.77■□□□□ 0.11
CLN3-248ENST00000636355 PLXNC1O60486 1568 aa15.75■□□□□ 0.11
CLN3-248ENST00000636355 CCER1Q8TC90 406 aaPredicted RBP15.75■□□□□ 0.11
CLN3-248ENST00000636355 SYCP2Q9BX26 1530 aa15.74■□□□□ 0.11
CLN3-248ENST00000636355 DHX57Q6P158 1386 aaKnown RBP15.74■□□□□ 0.11
CLN3-248ENST00000636355 MBD5Q9P267 1494 aa15.73■□□□□ 0.11
CLN3-248ENST00000636355 RSPH4AQ5TD94 716 aa15.72■□□□□ 0.11
CLN3-248ENST00000636355 GLI2P10070 1586 aa15.71■□□□□ 0.11
CLN3-248ENST00000636355 NPM1P06748 294 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLN3-248ENST00000636355 ITGAEP38570 1179 aa15.71■□□□□ 0.11
CLN3-248ENST00000636355 C9orf84Q5VXU9 1444 aa15.7■□□□□ 0.1
CLN3-248ENST00000636355 MAP3K4Q9Y6R4 1608 aa15.68■□□□□ 0.1
CLN3-248ENST00000636355 ANKRD30AQ9BXX3 1397 aa15.68■□□□□ 0.1
CLN3-248ENST00000636355 NCOA1Q15788 1441 aa15.68■□□□□ 0.1
CLN3-248ENST00000636355 FANCAO15360 1455 aa15.67■□□□□ 0.1
CLN3-248ENST00000636355 ZNF644Q9H582 1327 aaPredicted RBP15.67■□□□□ 0.1
CLN3-248ENST00000636355 EFCAB2Q5VUJ9 269 aa15.65■□□□□ 0.1
CLN3-248ENST00000636355 INO80Q9ULG1 1556 aaPredicted RBP15.65■□□□□ 0.1
CLN3-248ENST00000636355 DIP2BQ9P265 1576 aa15.64■□□□□ 0.09
CLN3-248ENST00000636355 KDM5DQ9BY66 1539 aa15.63■□□□□ 0.09
CLN3-248ENST00000636355 NEO1Q92859 1461 aa15.63■□□□□ 0.09
CLN3-248ENST00000636355 ZFYVE16Q7Z3T8 1539 aa15.63■□□□□ 0.09
CLN3-248ENST00000636355 RTEL1-TNFRSF6BF6WH68 1400 aa15.62■□□□□ 0.09
CLN3-248ENST00000636355 KDM6BO15054 1643 aa15.62■□□□□ 0.09
CLN3-248ENST00000636355 ZNF777Q9ULD5 760 aaPredicted RBP15.61■□□□□ 0.09
CLN3-248ENST00000636355 ADGRL1O94910 1474 aa15.6■□□□□ 0.09
CLN3-248ENST00000636355 DUOX2Q9NRD8 1548 aa15.6■□□□□ 0.09
CLN3-248ENST00000636355 ARHGEF12Q9NZN5 1544 aa15.6■□□□□ 0.09
CLN3-248ENST00000636355 KCNH8Q96L42 1107 aa15.6■□□□□ 0.09
CLN3-248ENST00000636355 KDM5CP41229 1560 aa15.6■□□□□ 0.09
CLN3-248ENST00000636355 UNC13BO14795 1591 aa15.59■□□□□ 0.09
CLN3-248ENST00000636355 CD109Q6YHK3 1445 aa15.59■□□□□ 0.09
CLN3-248ENST00000636355 ANKRD50Q9ULJ7 1429 aa15.59■□□□□ 0.09
CLN3-248ENST00000636355 ZNF518AQ6AHZ1 1483 aa15.59■□□□□ 0.09
CLN3-248ENST00000636355 TSPY4P0CV99 314 aa15.58■□□□□ 0.08
CLN3-248ENST00000636355 TSPY10P0CW01 314 aa15.58■□□□□ 0.08
CLN3-248ENST00000636355 KIF15Q9NS87 1388 aa15.58■□□□□ 0.08
CLN3-248ENST00000636355 ERBINQ96RT1 1412 aa15.58■□□□□ 0.08
CLN3-248ENST00000636355 EIF2AK4Q9P2K8 1649 aaKnown RBP15.57■□□□□ 0.08
CLN3-248ENST00000636355 ATP7AQ04656 1500 aa15.57■□□□□ 0.08
CLN3-248ENST00000636355 MAGI2Q86UL8 1455 aa15.55■□□□□ 0.08
CLN3-248ENST00000636355 CHIC2Q9UKJ5 165 aa15.55■□□□□ 0.08
CLN3-248ENST00000636355 POGZQ7Z3K3 1410 aa15.54■□□□□ 0.08
CLN3-248ENST00000636355 RRP7BPQ9NSQ0 103 aa15.54■□□□□ 0.08
CLN3-248ENST00000636355 DEPDC5O75140 1603 aa15.54■□□□□ 0.08
CLN3-248ENST00000636355 HECW2Q9P2P5 1572 aa15.53■□□□□ 0.08
CLN3-248ENST00000636355 TRAPPC8Q9Y2L5 1435 aa15.53■□□□□ 0.08
CLN3-248ENST00000636355 TEX14Q8IWB6 1497 aa15.52■□□□□ 0.08
CLN3-248ENST00000636355 KIF13AQ9H1H9 1805 aa15.52■□□□□ 0.08
CLN3-248ENST00000636355 BCORL1Q5H9F3 1711 aa15.52■□□□□ 0.08
CLN3-248ENST00000636355 RICTORQ6R327 1708 aa15.52■□□□□ 0.08
CLN3-248ENST00000636355 HNRNPMP52272 730 aaKnown RBP eCLIP15.52■□□□□ 0.08
CLN3-248ENST00000636355 IQGAP3Q86VI3 1631 aa15.52■□□□□ 0.08
CLN3-248ENST00000636355 PPRC1Q5VV67 1664 aaKnown RBP15.51■□□□□ 0.07
CLN3-248ENST00000636355 KIDINS220Q9ULH0 1771 aa15.51■□□□□ 0.07
CLN3-248ENST00000636355 SCAPERQ9BY12 1400 aa15.51■□□□□ 0.07
CLN3-248ENST00000636355 PZPP20742 1482 aa15.5■□□□□ 0.07
CLN3-248ENST00000636355 ZMYM4Q5VZL5 1548 aa15.49■□□□□ 0.07
CLN3-248ENST00000636355 DENND4BO75064 1496 aaPredicted RBP15.49■□□□□ 0.07
CLN3-248ENST00000636355 MLH3Q9UHC1 1453 aa15.49■□□□□ 0.07
CLN3-248ENST00000636355 TIMELESSQ9UNS1 1208 aa15.49■□□□□ 0.07
CLN3-248ENST00000636355 ILDR1Q86SU0 546 aaPredicted RBP15.48■□□□□ 0.07
CLN3-248ENST00000636355 SPAG9O60271 1321 aaKnown RBP15.46■□□□□ 0.07
CLN3-248ENST00000636355 PRDM15P57071 1507 aaPredicted RBP15.46■□□□□ 0.07
CLN3-248ENST00000636355 RNF17Q9BXT8 1623 aaKnown RBP15.46■□□□□ 0.06
CLN3-248ENST00000636355 FAM135AQ9P2D6 1515 aa15.45■□□□□ 0.06
CLN3-248ENST00000636355 FRMPD1Q5SYB0 1578 aa15.44■□□□□ 0.06
CLN3-248ENST00000636355 VWDEQ8N2E2 1590 aa15.42■□□□□ 0.06
CLN3-248ENST00000636355 ABCA6Q8N139 1617 aa15.42■□□□□ 0.06
CLN3-248ENST00000636355 TET3O43151 1660 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms