RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 FYCO1Q9BQS8 1478 aa17.44■□□□□ 0.38
VRK3-214ENST00000598553 PREX2Q70Z35 1606 aa17.44■□□□□ 0.38
VRK3-214ENST00000598553 MADDQ8WXG6 1647 aa17.44■□□□□ 0.38
VRK3-214ENST00000598553 HECW2Q9P2P5 1572 aa17.42■□□□□ 0.38
VRK3-214ENST00000598553 CCDC18Q5T9S5 1454 aa17.42■□□□□ 0.38
VRK3-214ENST00000598553 ZFYVE16Q7Z3T8 1539 aa17.42■□□□□ 0.38
VRK3-214ENST00000598553 POGZQ7Z3K3 1410 aa17.41■□□□□ 0.38
VRK3-214ENST00000598553 SCAPERQ9BY12 1400 aa17.41■□□□□ 0.38
VRK3-214ENST00000598553 ARHGAP5Q13017 1502 aa17.41■□□□□ 0.38
VRK3-214ENST00000598553 RIMS1Q86UR5 1692 aaKnown RBP17.39■□□□□ 0.37
VRK3-214ENST00000598553 ITSN2Q9NZM3 1697 aa17.39■□□□□ 0.37
VRK3-214ENST00000598553 ARHGEF12Q9NZN5 1544 aa17.38■□□□□ 0.37
VRK3-214ENST00000598553 CEP162Q5TB80 1403 aa17.37■□□□□ 0.37
VRK3-214ENST00000598553 KDM5CP41229 1560 aa17.36■□□□□ 0.37
VRK3-214ENST00000598553 ABCC1P33527 1531 aa17.36■□□□□ 0.37
VRK3-214ENST00000598553 PTPRMP28827 1452 aa17.35■□□□□ 0.37
VRK3-214ENST00000598553 SAMD9LQ8IVG5 1584 aa17.34■□□□□ 0.37
VRK3-214ENST00000598553 ABCA6Q8N139 1617 aa17.34■□□□□ 0.37
VRK3-214ENST00000598553 CDK11AQ9UQ88 783 aaPredicted RBP17.34■□□□□ 0.37
VRK3-214ENST00000598553 DIP2CQ9Y2E4 1556 aa17.32■□□□□ 0.36
VRK3-214ENST00000598553 LOC105371045A0A1W2PR82 267 aa17.32■□□□□ 0.36
VRK3-214ENST00000598553 FER1L4A9Z1Z3 1794 aa17.32■□□□□ 0.36
VRK3-214ENST00000598553 TRAPPC8Q9Y2L5 1435 aa17.31■□□□□ 0.36
VRK3-214ENST00000598553 EFCAB2Q5VUJ9 269 aa17.31■□□□□ 0.36
VRK3-214ENST00000598553 ARID4BQ4LE39 1312 aaPredicted RBP17.3■□□□□ 0.36
VRK3-214ENST00000598553 KIDINS220Q9ULH0 1771 aa17.3■□□□□ 0.36
VRK3-214ENST00000598553 MAGI2Q86UL8 1455 aa17.3■□□□□ 0.36
VRK3-214ENST00000598553 AFAP1Q8N556 730 aa17.29■□□□□ 0.36
VRK3-214ENST00000598553 GPATCH8Q9UKJ3 1502 aaKnown RBP17.29■□□□□ 0.36
VRK3-214ENST00000598553 ZNF518AQ6AHZ1 1483 aa17.28■□□□□ 0.36
VRK3-214ENST00000598553 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
VRK3-214ENST00000598553 SYCP2Q9BX26 1530 aa17.27■□□□□ 0.36
VRK3-214ENST00000598553 C9orf84Q5VXU9 1444 aa17.26■□□□□ 0.35
VRK3-214ENST00000598553 ATP10AO60312 1499 aa17.25■□□□□ 0.35
VRK3-214ENST00000598553 MLECQ14165 292 aa17.24■□□□□ 0.35
VRK3-214ENST00000598553 EHBP1L1Q8N3D4 1523 aa17.24■□□□□ 0.35
VRK3-214ENST00000598553 REREQ9P2R6 1566 aa17.21■□□□□ 0.35
VRK3-214ENST00000598553 MLH3Q9UHC1 1453 aa17.21■□□□□ 0.35
VRK3-214ENST00000598553 LMTK3Q96Q04 1460 aa17.2■□□□□ 0.34
VRK3-214ENST00000598553 MTUS2Q5JR59 1369 aa17.2■□□□□ 0.34
VRK3-214ENST00000598553 PLPPR3Q6T4P5 718 aa17.2■□□□□ 0.34
VRK3-214ENST00000598553 ZNF777Q9ULD5 760 aaPredicted RBP17.19■□□□□ 0.34
VRK3-214ENST00000598553 INO80Q9ULG1 1556 aaPredicted RBP17.19■□□□□ 0.34
VRK3-214ENST00000598553 SUPT6HQ7KZ85 1726 aaKnown RBP17.17■□□□□ 0.34
VRK3-214ENST00000598553 ZNF644Q9H582 1327 aaPredicted RBP17.17■□□□□ 0.34
VRK3-214ENST00000598553 CCNB3Q8WWL7 1395 aa17.15■□□□□ 0.34
VRK3-214ENST00000598553 VPS8Q8N3P4 1428 aa17.15■□□□□ 0.34
VRK3-214ENST00000598553 HNRNPMP52272 730 aaKnown RBP eCLIP17.15■□□□□ 0.34
VRK3-214ENST00000598553 C3P01024 1663 aa17.15■□□□□ 0.34
VRK3-214ENST00000598553 ATP7AQ04656 1500 aa17.15■□□□□ 0.34
VRK3-214ENST00000598553 NCOA2Q15596 1464 aa17.14■□□□□ 0.33
VRK3-214ENST00000598553 AGLP35573 1532 aa17.13■□□□□ 0.33
VRK3-214ENST00000598553 MYT1LQ9UL68 1186 aa17.13■□□□□ 0.33
VRK3-214ENST00000598553 CEBPAP49715 358 aaPredicted RBP17.12■□□□□ 0.33
VRK3-214ENST00000598553 ADGBQ8N7X0 1667 aa17.12■□□□□ 0.33
VRK3-214ENST00000598553 MBD5Q9P267 1494 aa17.12■□□□□ 0.33
VRK3-214ENST00000598553 PLXNC1O60486 1568 aa17.11■□□□□ 0.33
VRK3-214ENST00000598553 CFDP1Q9UEE9 299 aaPredicted RBP17.11■□□□□ 0.33
VRK3-214ENST00000598553 KIAA1107Q9UPP5 1409 aa17.1■□□□□ 0.33
VRK3-214ENST00000598553 PREX1Q8TCU6 1659 aa17.1■□□□□ 0.33
VRK3-214ENST00000598553 HSPA2P54652 639 aa17.09■□□□□ 0.33
VRK3-214ENST00000598553 LRRC9Q6ZRR7 1453 aa17.09■□□□□ 0.33
VRK3-214ENST00000598553 CAMSAP2Q08AD1 1489 aa17.08■□□□□ 0.32
VRK3-214ENST00000598553 PLEKHH2Q8IVE3 1493 aa17.07■□□□□ 0.32
VRK3-214ENST00000598553 KANK4Q5T7N3 995 aaPredicted RBP17.07■□□□□ 0.32
VRK3-214ENST00000598553 CLTCQ00610 1675 aaKnown RBP17.06■□□□□ 0.32
VRK3-214ENST00000598553 SPAG9O60271 1321 aaKnown RBP17.05■□□□□ 0.32
VRK3-214ENST00000598553 A2MP01023 1474 aa17.03■□□□□ 0.32
VRK3-214ENST00000598553 STRCQ7RTU9 1775 aa17.02■□□□□ 0.32
VRK3-214ENST00000598553 MROH2AA6NES4 1674 aa17.02■□□□□ 0.32
VRK3-214ENST00000598553 MAP3K1Q13233 1512 aa17.01■□□□□ 0.31
VRK3-214ENST00000598553 ILDR1Q86SU0 546 aaPredicted RBP17■□□□□ 0.31
VRK3-214ENST00000598553 CCDC141Q6ZP82 1450 aa16.99■□□□□ 0.31
VRK3-214ENST00000598553 ARHGEF5Q12774 1597 aa16.99■□□□□ 0.31
VRK3-214ENST00000598553 SETD1BQ9UPS6 1966 aaKnown RBP16.99■□□□□ 0.31
VRK3-214ENST00000598553 RTEL1-TNFRSF6BF6WH68 1400 aa16.95■□□□□ 0.3
VRK3-214ENST00000598553 MYO3AQ8NEV4 1616 aa16.93■□□□□ 0.3
VRK3-214ENST00000598553 CROCC2H7BZ55 1655 aa16.93■□□□□ 0.3
VRK3-214ENST00000598553 MYOM3Q5VTT5 1437 aa16.93■□□□□ 0.3
VRK3-214ENST00000598553 MAST1Q9Y2H9 1570 aa16.93■□□□□ 0.3
VRK3-214ENST00000598553 UHRF1BP1Q6BDS2 1440 aa16.92■□□□□ 0.3
VRK3-214ENST00000598553 CNTLNQ9NXG0 1405 aa16.91■□□□□ 0.3
VRK3-214ENST00000598553 ZMYM3Q14202 1370 aa16.9■□□□□ 0.3
VRK3-214ENST00000598553 PTPN23Q9H3S7 1636 aa16.9■□□□□ 0.3
VRK3-214ENST00000598553 GGT6Q6P531 493 aa16.9■□□□□ 0.3
VRK3-214ENST00000598553 ZNF142P52746 1687 aaPredicted RBP16.9■□□□□ 0.3
VRK3-214ENST00000598553 DHX29Q7Z478 1369 aaKnown RBP16.89■□□□□ 0.29
VRK3-214ENST00000598553 PTPRKQ15262 1439 aa16.88■□□□□ 0.29
VRK3-214ENST00000598553 MROH1Q8NDA8 1641 aa16.88■□□□□ 0.29
VRK3-214ENST00000598553 RNF17Q9BXT8 1623 aaKnown RBP16.86■□□□□ 0.29
VRK3-214ENST00000598553 CEP152O94986 1710 aa16.86■□□□□ 0.29
VRK3-214ENST00000598553 MIA2Q96PC5 1412 aa16.86■□□□□ 0.29
VRK3-214ENST00000598553 ESF1Q9H501 851 aaKnown RBP16.85■□□□□ 0.29
VRK3-214ENST00000598553 NPATQ14207 1427 aa16.85■□□□□ 0.29
VRK3-214ENST00000598553 DNMT1P26358 1616 aaKnown RBP16.85■□□□□ 0.29
VRK3-214ENST00000598553 CAMSAP1Q5T5Y3 1602 aa16.85■□□□□ 0.29
VRK3-214ENST00000598553 CEP170BQ9Y4F5 1589 aaPredicted RBP16.84■□□□□ 0.29
VRK3-214ENST00000598553 KIF3BO15066 747 aa16.83■□□□□ 0.28
VRK3-214ENST00000598553 KDM5DQ9BY66 1539 aa16.83■□□□□ 0.28
VRK3-214ENST00000598553 ABCC5O15440 1437 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms