RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 RNF25Q96BH1 459 aaPredicted RBP7.65□□□□□ -1.18
TOPBP1-210ENST00000572787 GZF1Q9H116 711 aaPredicted RBP7.65□□□□□ -1.18
TOPBP1-210ENST00000572787 TRAK2O60296 914 aa7.64□□□□□ -1.19
TOPBP1-210ENST00000572787 BRD2P25440 801 aaKnown RBP7.64□□□□□ -1.19
TOPBP1-210ENST00000572787 ARHGEF1Q92888 912 aaKnown RBP7.64□□□□□ -1.19
TOPBP1-210ENST00000572787 KDM4CQ9H3R0 1056 aa7.64□□□□□ -1.19
TOPBP1-210ENST00000572787 ZBTB47Q9UFB7 747 aaPredicted RBP7.64□□□□□ -1.19
TOPBP1-210ENST00000572787 TESPA1A2RU30 521 aaPredicted RBP7.63□□□□□ -1.19
TOPBP1-210ENST00000572787 ZNF428Q96B54 188 aa7.63□□□□□ -1.19
TOPBP1-210ENST00000572787 STK25O00506 426 aa7.62□□□□□ -1.19
TOPBP1-210ENST00000572787 RIOK3O14730 519 aaKnown RBP7.62□□□□□ -1.19
TOPBP1-210ENST00000572787 GALR2O43603 387 aaPredicted RBP7.62□□□□□ -1.19
TOPBP1-210ENST00000572787 RSPH4AQ5TD94 716 aa7.62□□□□□ -1.19
TOPBP1-210ENST00000572787 PCDH10Q9P2E7 1040 aa7.62□□□□□ -1.19
TOPBP1-210ENST00000572787 USP35Q9P2H5 1018 aa7.62□□□□□ -1.19
TOPBP1-210ENST00000572787 POTEB2H3BUK9 544 aa7.6□□□□□ -1.19
TOPBP1-210ENST00000572787 SMYD5Q6GMV2 418 aa7.6□□□□□ -1.19
TOPBP1-210ENST00000572787 SERPINA10Q9UK55 444 aa7.58□□□□□ -1.2
TOPBP1-210ENST00000572787 SEMA3EO15041 775 aa7.57□□□□□ -1.2
TOPBP1-210ENST00000572787 PAK3O75914 559 aaPredicted RBP7.57□□□□□ -1.2
TOPBP1-210ENST00000572787 GSE1Q14687 1217 aa7.57□□□□□ -1.2
TOPBP1-210ENST00000572787 FBXW7Q969H0 707 aa7.57□□□□□ -1.2
TOPBP1-210ENST00000572787 VGFO15240 615 aaPredicted RBP7.56□□□□□ -1.2
TOPBP1-210ENST00000572787 CCDC97Q96F63 343 aaPredicted RBP7.56□□□□□ -1.2
TOPBP1-210ENST00000572787 POLR3GLQ9BT43 218 aa7.56□□□□□ -1.2
TOPBP1-210ENST00000572787 PATL2C9JE40 543 aaKnown RBP7.55□□□□□ -1.2
TOPBP1-210ENST00000572787 FAM177A1Q8N128 213 aaPredicted RBP7.54□□□□□ -1.2
TOPBP1-210ENST00000572787 UBE2Q2Q8WVN8 375 aa7.54□□□□□ -1.2
TOPBP1-210ENST00000572787 ZNF316A6NFI3 1004 aaPredicted RBP7.53□□□□□ -1.2
TOPBP1-210ENST00000572787 KRI1Q8N9T8 703 aaKnown RBP7.53□□□□□ -1.2
TOPBP1-210ENST00000572787 AMOTL2Q9Y2J4 779 aa7.53□□□□□ -1.2
TOPBP1-210ENST00000572787 ONECUT3O60422 494 aaPredicted RBP7.52□□□□□ -1.21
TOPBP1-210ENST00000572787 PDE4DQ08499 809 aa7.52□□□□□ -1.21
TOPBP1-210ENST00000572787 CADPS2Q86UW7 1296 aa7.52□□□□□ -1.21
TOPBP1-210ENST00000572787 CLUAP1Q96AJ1 413 aa7.52□□□□□ -1.21
TOPBP1-210ENST00000572787 CREBZFQ9NS37 354 aa7.52□□□□□ -1.21
TOPBP1-210ENST00000572787 PDE4CQ08493 712 aa7.51□□□□□ -1.21
TOPBP1-210ENST00000572787 RETREG2Q8NC44 543 aa7.51□□□□□ -1.21
TOPBP1-210ENST00000572787 PHF12Q96QT6 1004 aa7.51□□□□□ -1.21
TOPBP1-210ENST00000572787 SGIP1Q9BQI5 828 aa7.51□□□□□ -1.21
TOPBP1-210ENST00000572787 DHX37Q8IY37 1157 aaKnown RBP7.5□□□□□ -1.21
TOPBP1-210ENST00000572787 TRIM66O15016 1216 aa7.49□□□□□ -1.21
TOPBP1-210ENST00000572787 E2F4Q16254 413 aa7.49□□□□□ -1.21
TOPBP1-210ENST00000572787 MAMSTRQ6ZN01 415 aa7.49□□□□□ -1.21
TOPBP1-210ENST00000572787 STK24Q9Y6E0 443 aa7.49□□□□□ -1.21
TOPBP1-210ENST00000572787 CANXP27824 592 aaKnown RBP7.48□□□□□ -1.21
TOPBP1-210ENST00000572787 IRF5Q13568 498 aa7.48□□□□□ -1.21
TOPBP1-210ENST00000572787 DDRGK1Q96HY6 314 aa7.48□□□□□ -1.21
TOPBP1-210ENST00000572787 METRNQ9UJH8 293 aa7.48□□□□□ -1.21
TOPBP1-210ENST00000572787 ZNF777Q9ULD5 760 aaPredicted RBP7.48□□□□□ -1.21
TOPBP1-210ENST00000572787 FAM163AQ96GL9 167 aaPredicted RBP7.47□□□□□ -1.21
TOPBP1-210ENST00000572787 FAM117AQ9C073 453 aa7.47□□□□□ -1.21
TOPBP1-210ENST00000572787 BCL11BQ9C0K0 894 aaPredicted RBP7.47□□□□□ -1.21
TOPBP1-210ENST00000572787 C7P10643 843 aa7.46□□□□□ -1.22
TOPBP1-210ENST00000572787 SLC39A7Q92504 469 aa7.46□□□□□ -1.22
TOPBP1-210ENST00000572787 PROSER2Q86WR7 435 aaPredicted RBP7.45□□□□□ -1.22
TOPBP1-210ENST00000572787 CCDC125Q86Z20 511 aa7.45□□□□□ -1.22
TOPBP1-210ENST00000572787 PPM1GO15355 546 aaPredicted RBP7.44□□□□□ -1.22
TOPBP1-210ENST00000572787 FAM9AQ8IZU1 332 aaPredicted RBP7.44□□□□□ -1.22
TOPBP1-210ENST00000572787 GOPCQ9HD26 462 aa7.43□□□□□ -1.22
TOPBP1-210ENST00000572787 SCUBE2Q9NQ36 999 aa7.43□□□□□ -1.22
TOPBP1-210ENST00000572787 PPP1R15AO75807 674 aaPredicted RBP7.42□□□□□ -1.22
TOPBP1-210ENST00000572787 ASTLQ6HA08 431 aaPredicted RBP7.42□□□□□ -1.22
TOPBP1-210ENST00000572787 MYT1LQ9UL68 1186 aa7.42□□□□□ -1.22
TOPBP1-210ENST00000572787 PLEKHG3A1L390 1219 aa7.41□□□□□ -1.22
TOPBP1-210ENST00000572787 KCNA1Q09470 495 aa7.41□□□□□ -1.22
TOPBP1-210ENST00000572787 TAF7LQ5H9L4 462 aa7.41□□□□□ -1.22
TOPBP1-210ENST00000572787 GPIHBP1Q8IV16 184 aa7.41□□□□□ -1.22
TOPBP1-210ENST00000572787 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.4□□□□□ -1.22
TOPBP1-210ENST00000572787 ATMINO43313 823 aaPredicted RBP7.4□□□□□ -1.22
TOPBP1-210ENST00000572787 POTEJP0CG39 1038 aa7.4□□□□□ -1.22
TOPBP1-210ENST00000572787 ZFP91Q96JP5 570 aaPredicted RBP7.4□□□□□ -1.22
TOPBP1-210ENST00000572787 ACIN1Q9UKV3 1341 aaKnown RBP7.4□□□□□ -1.22
TOPBP1-210ENST00000572787 FNBP4Q8N3X1 1017 aaPredicted RBP7.39□□□□□ -1.23
TOPBP1-210ENST00000572787 MS4A3Q96HJ5 214 aa7.39□□□□□ -1.23
TOPBP1-210ENST00000572787 MCM6Q14566 821 aa7.38□□□□□ -1.23
TOPBP1-210ENST00000572787 CCDC27Q2M243 656 aa7.38□□□□□ -1.23
TOPBP1-210ENST00000572787 LCE2DQ5TA82 110 aaPredicted RBP7.38□□□□□ -1.23
TOPBP1-210ENST00000572787 DCAF8Q5TAQ9 597 aa7.37□□□□□ -1.23
TOPBP1-210ENST00000572787 BRD1O95696 1058 aa7.36□□□□□ -1.23
TOPBP1-210ENST00000572787 CHRM1P11229 460 aaPredicted RBP7.36□□□□□ -1.23
TOPBP1-210ENST00000572787 CWC22Q9HCG8 908 aaKnown RBP7.36□□□□□ -1.23
TOPBP1-210ENST00000572787 ARID4BQ4LE39 1312 aaPredicted RBP7.35□□□□□ -1.23
TOPBP1-210ENST00000572787 PCMTD1Q96MG8 357 aaPredicted RBP7.35□□□□□ -1.23
TOPBP1-210ENST00000572787 ARIH1Q9Y4X5 557 aaPredicted RBP7.35□□□□□ -1.23
TOPBP1-210ENST00000572787 BCCIPQ9P287 314 aaKnown RBP eCLIP7.34□□□□□ -1.23
TOPBP1-210ENST00000572787 RBM26Q5T8P6 1007 aaKnown RBP7.33□□□□□ -1.24
TOPBP1-210ENST00000572787 IGSF5Q9NSI5 407 aa7.33□□□□□ -1.24
TOPBP1-210ENST00000572787 NUBP1P53384 320 aa7.32□□□□□ -1.24
TOPBP1-210ENST00000572787 CC2D2BQ6DHV5 1058 aa7.32□□□□□ -1.24
TOPBP1-210ENST00000572787 CDAN1Q8IWY9 1227 aa7.32□□□□□ -1.24
TOPBP1-210ENST00000572787 PSMD1Q99460 953 aa7.32□□□□□ -1.24
TOPBP1-210ENST00000572787 MNX1P50219 401 aaPredicted RBP7.31□□□□□ -1.24
TOPBP1-210ENST00000572787 ATN1P54259 1190 aaPredicted RBP7.31□□□□□ -1.24
TOPBP1-210ENST00000572787 NCLP19338 710 aaKnown RBP7.3□□□□□ -1.24
TOPBP1-210ENST00000572787 CERS3Q8IU89 383 aa7.3□□□□□ -1.24
TOPBP1-210ENST00000572787 CLSTN1O94985 981 aa7.29□□□□□ -1.24
TOPBP1-210ENST00000572787 ANKRD13AQ8IZ07 590 aa7.29□□□□□ -1.24
TOPBP1-210ENST00000572787 TSPYL2Q9H2G4 693 aaPredicted RBP7.29□□□□□ -1.24
TOPBP1-210ENST00000572787 SND1Q7KZF4 910 aaKnown RBP eCLIP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms