RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 EMILIN3Q9NT22 766 aa12.04□□□□□ -0.48
UBR1-208ENST00000569066 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
UBR1-208ENST00000569066 ATN1P54259 1190 aaPredicted RBP12.04□□□□□ -0.48
UBR1-208ENST00000569066 MICALL2Q8IY33 904 aa12.04□□□□□ -0.48
UBR1-208ENST00000569066 HAX1O00165 279 aa12.03□□□□□ -0.48
UBR1-208ENST00000569066 DPYSL4O14531 572 aa12.02□□□□□ -0.49
UBR1-208ENST00000569066 RBM26Q5T8P6 1007 aaKnown RBP12.02□□□□□ -0.49
UBR1-208ENST00000569066 TMEM132AQ24JP5 1023 aa12.01□□□□□ -0.49
UBR1-208ENST00000569066 ZMYND10O75800 440 aa11.99□□□□□ -0.49
UBR1-208ENST00000569066 NEUROD2Q15784 382 aa11.97□□□□□ -0.49
UBR1-208ENST00000569066 IRX5P78411 483 aaPredicted RBP11.96□□□□□ -0.49
UBR1-208ENST00000569066 ATMINO43313 823 aaPredicted RBP11.95□□□□□ -0.5
UBR1-208ENST00000569066 SMYD5Q6GMV2 418 aa11.95□□□□□ -0.5
UBR1-208ENST00000569066 C2orf72A6NCS6 295 aa11.93□□□□□ -0.5
UBR1-208ENST00000569066 TMC2Q8TDI7 906 aa11.93□□□□□ -0.5
UBR1-208ENST00000569066 FOXK1P85037 733 aa11.92□□□□□ -0.5
UBR1-208ENST00000569066 ASTLQ6HA08 431 aaPredicted RBP11.91□□□□□ -0.5
UBR1-208ENST00000569066 PDIA6Q15084 440 aa11.9□□□□□ -0.5
UBR1-208ENST00000569066 GPIHBP1Q8IV16 184 aa11.9□□□□□ -0.5
UBR1-208ENST00000569066 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
UBR1-208ENST00000569066 PLPP6Q8IY26 295 aa11.9□□□□□ -0.5
UBR1-208ENST00000569066 TMEM121BQ9BXQ6 578 aaPredicted RBP11.89□□□□□ -0.51
UBR1-208ENST00000569066 OCEL1Q9H607 264 aa11.89□□□□□ -0.51
UBR1-208ENST00000569066 BARGINQ6ZT62 677 aa11.89□□□□□ -0.51
UBR1-208ENST00000569066 KIF3CO14782 793 aa11.88□□□□□ -0.51
UBR1-208ENST00000569066 TMEM92Q6UXU6 159 aa11.88□□□□□ -0.51
UBR1-208ENST00000569066 PELP1Q8IZL8 1130 aaKnown RBP11.85□□□□□ -0.51
UBR1-208ENST00000569066 GPBP1L1Q9HC44 474 aaPredicted RBP11.85□□□□□ -0.51
UBR1-208ENST00000569066 UPF1Q92900 1129 aaKnown RBP eCLIP11.84□□□□□ -0.51
UBR1-208ENST00000569066 COLQQ9Y215 455 aaPredicted RBP11.84□□□□□ -0.51
UBR1-208ENST00000569066 IER5LQ5T953 404 aa11.83□□□□□ -0.52
UBR1-208ENST00000569066 PLCG2P16885 1265 aa11.81□□□□□ -0.52
UBR1-208ENST00000569066 GRXCR2A6NFK2 248 aa11.81□□□□□ -0.52
UBR1-208ENST00000569066 GPR37O15354 613 aa11.81□□□□□ -0.52
UBR1-208ENST00000569066 SPDYE16A6NNV3 312 aaPredicted RBP11.8□□□□□ -0.52
UBR1-208ENST00000569066 G3V3G9 751 aa11.79□□□□□ -0.52
UBR1-208ENST00000569066 GABBR2O75899 941 aa11.79□□□□□ -0.52
UBR1-208ENST00000569066 KRI1Q8N9T8 703 aaKnown RBP11.79□□□□□ -0.52
UBR1-208ENST00000569066 CLCN6P51797 869 aa11.77□□□□□ -0.53
UBR1-208ENST00000569066 MAP3K9P80192 1104 aa11.77□□□□□ -0.53
UBR1-208ENST00000569066 AK7Q96M32 723 aa11.76□□□□□ -0.53
UBR1-208ENST00000569066 POTEFA5A3E0 1075 aa11.75□□□□□ -0.53
UBR1-208ENST00000569066 DDX12PQ92771 950 aa11.75□□□□□ -0.53
UBR1-208ENST00000569066 SEC24BO95487 1268 aa11.73□□□□□ -0.53
UBR1-208ENST00000569066 TRIM66O15016 1216 aa11.72□□□□□ -0.53
UBR1-208ENST00000569066 PRIM1P49642 420 aaKnown RBP11.72□□□□□ -0.53
UBR1-208ENST00000569066 C14orf37Q86TY3 774 aa11.72□□□□□ -0.53
UBR1-208ENST00000569066 OXER1Q8TDS5 423 aa11.72□□□□□ -0.53
UBR1-208ENST00000569066 NUTM2FA1L443 756 aa11.71□□□□□ -0.53
UBR1-208ENST00000569066 OSBPP22059 807 aa11.71□□□□□ -0.53
UBR1-208ENST00000569066 KDM4CQ9H3R0 1056 aa11.7□□□□□ -0.54
UBR1-208ENST00000569066 IL27Q8NEV9 243 aa11.7□□□□□ -0.54
UBR1-208ENST00000569066 L3MBTL3Q96JM7 780 aaPredicted RBP11.7□□□□□ -0.54
UBR1-208ENST00000569066 FECHP22830 423 aa11.69□□□□□ -0.54
UBR1-208ENST00000569066 DCBLD2Q96PD2 775 aa11.69□□□□□ -0.54
UBR1-208ENST00000569066 PDE4DQ08499 809 aa11.69□□□□□ -0.54
UBR1-208ENST00000569066 CCDC102AQ96A19 550 aa11.65□□□□□ -0.54
UBR1-208ENST00000569066 EVI5O60447 810 aa11.64□□□□□ -0.55
UBR1-208ENST00000569066 POTEIP0CG38 1075 aa11.63□□□□□ -0.55
UBR1-208ENST00000569066 METRNQ9UJH8 293 aa11.63□□□□□ -0.55
UBR1-208ENST00000569066 PTGER2P43116 358 aa11.61□□□□□ -0.55
UBR1-208ENST00000569066 MAP2K5Q13163 448 aa11.61□□□□□ -0.55
UBR1-208ENST00000569066 SLC39A7Q92504 469 aa11.61□□□□□ -0.55
UBR1-208ENST00000569066 FAM117AQ9C073 453 aa11.6□□□□□ -0.55
UBR1-208ENST00000569066 GNPATO15228 680 aa11.59□□□□□ -0.55
UBR1-208ENST00000569066 C3orf67Q6ZVT6 689 aa11.59□□□□□ -0.55
UBR1-208ENST00000569066 IRF6O14896 467 aa11.58□□□□□ -0.55
UBR1-208ENST00000569066 TBC1D12O60347 775 aa11.58□□□□□ -0.56
UBR1-208ENST00000569066 MINK1Q8N4C8 1332 aaPredicted RBP11.58□□□□□ -0.56
UBR1-208ENST00000569066 CDHR5Q9HBB8 845 aa11.57□□□□□ -0.56
UBR1-208ENST00000569066 C7P10643 843 aa11.57□□□□□ -0.56
UBR1-208ENST00000569066 PTCD2Q8WV60 388 aaKnown RBP11.57□□□□□ -0.56
UBR1-208ENST00000569066 PTGDRQ13258 359 aa11.56□□□□□ -0.56
UBR1-208ENST00000569066 PARP9Q8IXQ6 854 aa11.56□□□□□ -0.56
UBR1-208ENST00000569066 HIC1Q14526 733 aa11.56□□□□□ -0.56
UBR1-208ENST00000569066 FCHSD2O94868 740 aa11.55□□□□□ -0.56
UBR1-208ENST00000569066 ERICH6Q7L0X2 663 aa11.55□□□□□ -0.56
UBR1-208ENST00000569066 PLEKHG3A1L390 1219 aa11.53□□□□□ -0.56
UBR1-208ENST00000569066 AMHR2Q16671 573 aa11.52□□□□□ -0.57
UBR1-208ENST00000569066 RBM33Q96EV2 1170 aaKnown RBP11.51□□□□□ -0.57
UBR1-208ENST00000569066 SUPT5HO00267 1087 aaKnown RBP11.5□□□□□ -0.57
UBR1-208ENST00000569066 TSR1Q2NL82 804 aaKnown RBP11.5□□□□□ -0.57
UBR1-208ENST00000569066 NPDC1Q9NQX5 325 aaPredicted RBP11.5□□□□□ -0.57
UBR1-208ENST00000569066 POTEHQ6S545 545 aa11.49□□□□□ -0.57
UBR1-208ENST00000569066 ANO8Q9HCE9 1232 aaPredicted RBP11.49□□□□□ -0.57
UBR1-208ENST00000569066 SLC34A2O95436 690 aa11.48□□□□□ -0.57
UBR1-208ENST00000569066 TTLL12Q14166 644 aaPredicted RBP11.48□□□□□ -0.57
UBR1-208ENST00000569066 REPIN1Q9BWE0 567 aaKnown RBP11.48□□□□□ -0.57
UBR1-208ENST00000569066 ZNF316A6NFI3 1004 aaPredicted RBP11.48□□□□□ -0.57
UBR1-208ENST00000569066 MAP3K7O43318 606 aa11.48□□□□□ -0.57
UBR1-208ENST00000569066 EN1Q05925 392 aaPredicted RBP11.48□□□□□ -0.57
UBR1-208ENST00000569066 PCDHGA10Q9Y5H3 936 aa11.48□□□□□ -0.57
UBR1-208ENST00000569066 FAM161AQ3B820 660 aa11.45□□□□□ -0.58
UBR1-208ENST00000569066 PHOX2BQ99453 314 aa11.45□□□□□ -0.58
UBR1-208ENST00000569066 PCDHGA4Q9Y5G9 962 aa11.45□□□□□ -0.58
UBR1-208ENST00000569066 MS4A1P11836 297 aa11.44□□□□□ -0.58
UBR1-208ENST00000569066 PHF14O94880 888 aa11.43□□□□□ -0.58
UBR1-208ENST00000569066 GIGYF2Q6Y7W6 1299 aaKnown RBP11.43□□□□□ -0.58
UBR1-208ENST00000569066 NLRP7Q8WX94 980 aa11.42□□□□□ -0.58
UBR1-208ENST00000569066 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms