RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 PDE4DQ08499 809 aa9.7□□□□□ -0.86
TSPAN3-209ENST00000560715 ZFP91Q96JP5 570 aaPredicted RBP9.7□□□□□ -0.86
TSPAN3-209ENST00000560715 SMARCA4P51532 1647 aa9.7□□□□□ -0.86
TSPAN3-209ENST00000560715 ZNF692Q9BU19 519 aaPredicted RBP9.69□□□□□ -0.86
TSPAN3-209ENST00000560715 POM121Q96HA1 1249 aa9.69□□□□□ -0.86
TSPAN3-209ENST00000560715 PLEKHG3A1L390 1219 aa9.68□□□□□ -0.86
TSPAN3-209ENST00000560715 CARNS1A5YM72 827 aa9.68□□□□□ -0.86
TSPAN3-209ENST00000560715 AK7Q96M32 723 aa9.68□□□□□ -0.86
TSPAN3-209ENST00000560715 CLSPNQ9HAW4 1339 aa9.67□□□□□ -0.86
TSPAN3-209ENST00000560715 ONECUT3O60422 494 aaPredicted RBP9.67□□□□□ -0.86
TSPAN3-209ENST00000560715 PABPN1Q86U42 306 aaKnown RBP eCLIP9.67□□□□□ -0.86
TSPAN3-209ENST00000560715 PPM1GO15355 546 aaPredicted RBP9.66□□□□□ -0.86
TSPAN3-209ENST00000560715 MYT1LQ9UL68 1186 aa9.65□□□□□ -0.86
TSPAN3-209ENST00000560715 TRIM66O15016 1216 aa9.65□□□□□ -0.87
TSPAN3-209ENST00000560715 YTHDC1Q96MU7 727 aaKnown RBP9.64□□□□□ -0.87
TSPAN3-209ENST00000560715 TOP2AP11388 1531 aaKnown RBP9.63□□□□□ -0.87
TSPAN3-209ENST00000560715 CWC22Q9HCG8 908 aaKnown RBP9.63□□□□□ -0.87
TSPAN3-209ENST00000560715 BRD2P25440 801 aaKnown RBP9.62□□□□□ -0.87
TSPAN3-209ENST00000560715 ARHGEF1Q92888 912 aaKnown RBP9.62□□□□□ -0.87
TSPAN3-209ENST00000560715 SUPT16HQ9Y5B9 1047 aaKnown RBP9.61□□□□□ -0.87
TSPAN3-209ENST00000560715 E2F4Q16254 413 aa9.6□□□□□ -0.87
TSPAN3-209ENST00000560715 MSH5O43196 834 aa9.6□□□□□ -0.87
TSPAN3-209ENST00000560715 CCDC97Q96F63 343 aaPredicted RBP9.59□□□□□ -0.87
TSPAN3-209ENST00000560715 UBE2Q2Q8WVN8 375 aa9.59□□□□□ -0.87
TSPAN3-209ENST00000560715 STAG3Q9UJ98 1225 aa9.59□□□□□ -0.87
TSPAN3-209ENST00000560715 FLIIQ13045 1269 aa9.58□□□□□ -0.88
TSPAN3-209ENST00000560715 PEG3Q9GZU2 1588 aa9.58□□□□□ -0.88
TSPAN3-209ENST00000560715 MLLT3P42568 568 aaPredicted RBP9.58□□□□□ -0.88
TSPAN3-209ENST00000560715 CCER1Q8TC90 406 aaPredicted RBP9.58□□□□□ -0.88
TSPAN3-209ENST00000560715 DCAF8Q5TAQ9 597 aa9.57□□□□□ -0.88
TSPAN3-209ENST00000560715 VGFO15240 615 aaPredicted RBP9.56□□□□□ -0.88
TSPAN3-209ENST00000560715 EIF4G1Q04637 1599 aaKnown RBP9.56□□□□□ -0.88
TSPAN3-209ENST00000560715 IRX6P78412 446 aaPredicted RBP9.55□□□□□ -0.88
TSPAN3-209ENST00000560715 GPIHBP1Q8IV16 184 aa9.55□□□□□ -0.88
TSPAN3-209ENST00000560715 SPINK5Q9NQ38 1064 aaPredicted RBP9.55□□□□□ -0.88
TSPAN3-209ENST00000560715 MCM6Q14566 821 aa9.54□□□□□ -0.88
TSPAN3-209ENST00000560715 SMARCA2P51531 1590 aa9.54□□□□□ -0.88
TSPAN3-209ENST00000560715 UNCXA6NJT0 531 aa9.53□□□□□ -0.88
TSPAN3-209ENST00000560715 CCDC88BA6NC98 1476 aa9.53□□□□□ -0.88
TSPAN3-209ENST00000560715 PROSER2Q86WR7 435 aaPredicted RBP9.53□□□□□ -0.88
TSPAN3-209ENST00000560715 A6NJR5 290 aa9.52□□□□□ -0.89
TSPAN3-209ENST00000560715 ANO8Q9HCE9 1232 aaPredicted RBP9.52□□□□□ -0.89
TSPAN3-209ENST00000560715 PPP1R37O75864 691 aa9.49□□□□□ -0.89
TSPAN3-209ENST00000560715 SMARCA5O60264 1052 aaPredicted RBP9.48□□□□□ -0.89
TSPAN3-209ENST00000560715 PYGBP11216 843 aa9.48□□□□□ -0.89
TSPAN3-209ENST00000560715 BRPF3Q9ULD4 1205 aa9.48□□□□□ -0.89
TSPAN3-209ENST00000560715 ATAD2BQ9ULI0 1458 aa9.47□□□□□ -0.89
TSPAN3-209ENST00000560715 RSPH4AQ5TD94 716 aa9.46□□□□□ -0.89
TSPAN3-209ENST00000560715 PARP9Q8IXQ6 854 aa9.46□□□□□ -0.89
TSPAN3-209ENST00000560715 RYDENQ9NUL5 291 aaKnown RBP9.46□□□□□ -0.89
TSPAN3-209ENST00000560715 NUBP1P53384 320 aa9.45□□□□□ -0.9
TSPAN3-209ENST00000560715 PDE4CQ08493 712 aa9.45□□□□□ -0.9
TSPAN3-209ENST00000560715 SERPINA10Q9UK55 444 aa9.45□□□□□ -0.9
TSPAN3-209ENST00000560715 GSE1Q14687 1217 aa9.45□□□□□ -0.9
TSPAN3-209ENST00000560715 FNBP4Q8N3X1 1017 aaPredicted RBP9.45□□□□□ -0.9
TSPAN3-209ENST00000560715 ABCB7O75027 752 aa9.44□□□□□ -0.9
TSPAN3-209ENST00000560715 ZNF526Q8TF50 670 aaPredicted RBP9.44□□□□□ -0.9
TSPAN3-209ENST00000560715 CC2D2AQ9P2K1 1620 aa9.44□□□□□ -0.9
TSPAN3-209ENST00000560715 PLSCR2Q9NRY7 297 aa9.44□□□□□ -0.9
TSPAN3-209ENST00000560715 ZBTB47Q9UFB7 747 aaPredicted RBP9.43□□□□□ -0.9
TSPAN3-209ENST00000560715 BAZ1BQ9UIG0 1483 aaKnown RBP9.43□□□□□ -0.9
TSPAN3-209ENST00000560715 CCDC27Q2M243 656 aa9.42□□□□□ -0.9
TSPAN3-209ENST00000560715 OSCARQ8IYS5 282 aa9.42□□□□□ -0.9
TSPAN3-209ENST00000560715 KDM4AO75164 1064 aa9.42□□□□□ -0.9
TSPAN3-209ENST00000560715 RBM19Q9Y4C8 960 aaKnown RBP9.41□□□□□ -0.9
TSPAN3-209ENST00000560715 DDRGK1Q96HY6 314 aa9.41□□□□□ -0.9
TSPAN3-209ENST00000560715 ARID4BQ4LE39 1312 aaPredicted RBP9.41□□□□□ -0.9
TSPAN3-209ENST00000560715 CERS3Q8IU89 383 aa9.4□□□□□ -0.9
TSPAN3-209ENST00000560715 ZNF592Q92610 1267 aa9.4□□□□□ -0.9
TSPAN3-209ENST00000560715 ERICH6BQ5W0A0 696 aa9.4□□□□□ -0.91
TSPAN3-209ENST00000560715 SMYD5Q6GMV2 418 aa9.39□□□□□ -0.91
TSPAN3-209ENST00000560715 ARIH1Q9Y4X5 557 aaPredicted RBP9.39□□□□□ -0.91
TSPAN3-209ENST00000560715 RFX1P22670 979 aa9.39□□□□□ -0.91
TSPAN3-209ENST00000560715 ATP1B4Q9UN42 357 aaPredicted RBP9.39□□□□□ -0.91
TSPAN3-209ENST00000560715 ABCC8Q09428 1581 aa9.39□□□□□ -0.91
TSPAN3-209ENST00000560715 IVNS1ABPQ9Y6Y0 642 aa9.38□□□□□ -0.91
TSPAN3-209ENST00000560715 MFRPQ9BY79 579 aa9.38□□□□□ -0.91
TSPAN3-209ENST00000560715 PPP1R1BQ9UD71 204 aaPredicted RBP9.38□□□□□ -0.91
TSPAN3-209ENST00000560715 HMGXB3Q12766 1538 aa9.38□□□□□ -0.91
TSPAN3-209ENST00000560715 TMED8Q6PL24 325 aaPredicted RBP9.38□□□□□ -0.91
TSPAN3-209ENST00000560715 NCKAP5LQ9HCH0 1330 aa9.37□□□□□ -0.91
TSPAN3-209ENST00000560715 CCDC102AQ96A19 550 aa9.37□□□□□ -0.91
TSPAN3-209ENST00000560715 TTLL12Q14166 644 aaPredicted RBP9.37□□□□□ -0.91
TSPAN3-209ENST00000560715 LARP6Q9BRS8 491 aaKnown RBP9.37□□□□□ -0.91
TSPAN3-209ENST00000560715 SALL2Q9Y467 1007 aaPredicted RBP9.37□□□□□ -0.91
TSPAN3-209ENST00000560715 NCAPD3P42695 1498 aa9.36□□□□□ -0.91
TSPAN3-209ENST00000560715 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.35□□□□□ -0.91
TSPAN3-209ENST00000560715 DEKP35659 375 aaKnown RBP9.35□□□□□ -0.91
TSPAN3-209ENST00000560715 CCDC125Q86Z20 511 aa9.34□□□□□ -0.91
TSPAN3-209ENST00000560715 ZNF330Q9Y3S2 320 aaPredicted RBP9.34□□□□□ -0.91
TSPAN3-209ENST00000560715 MS4A1P11836 297 aa9.33□□□□□ -0.92
TSPAN3-209ENST00000560715 KIAA1522Q9P206 1035 aaPredicted RBP9.33□□□□□ -0.92
TSPAN3-209ENST00000560715 FECHP22830 423 aa9.32□□□□□ -0.92
TSPAN3-209ENST00000560715 RASEFQ8IZ41 740 aa9.31□□□□□ -0.92
TSPAN3-209ENST00000560715 COG6Q9Y2V7 657 aa9.31□□□□□ -0.92
TSPAN3-209ENST00000560715 FANCIQ9NVI1 1328 aa9.31□□□□□ -0.92
TSPAN3-209ENST00000560715 WRNQ14191 1432 aaPredicted RBP eCLIP9.3□□□□□ -0.92
TSPAN3-209ENST00000560715 EEA1Q15075 1411 aa9.3□□□□□ -0.92
TSPAN3-209ENST00000560715 POM121CA8CG34 1229 aa9.3□□□□□ -0.92
TSPAN3-209ENST00000560715 TAF7LQ5H9L4 462 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms