RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.03□□□□□ -0.8
VPS13C-207ENST00000558919 PLCB2Q00722 1185 aa9.95□□□□□ -0.82
VPS13C-207ENST00000558919 SLAIN1Q8ND83 568 aa9.95□□□□□ -0.82
VPS13C-207ENST00000558919 TMEM92Q6UXU6 159 aa9.91□□□□□ -0.82
VPS13C-207ENST00000558919 KIF3CO14782 793 aa9.89□□□□□ -0.83
VPS13C-207ENST00000558919 TMC2Q8TDI7 906 aa9.89□□□□□ -0.83
VPS13C-207ENST00000558919 C2orf72A6NCS6 295 aa9.87□□□□□ -0.83
VPS13C-207ENST00000558919 PDE4AP27815 886 aa9.87□□□□□ -0.83
VPS13C-207ENST00000558919 CRISPLD2Q9H0B8 497 aa9.87□□□□□ -0.83
VPS13C-207ENST00000558919 GPHNQ9NQX3 736 aaPredicted RBP9.87□□□□□ -0.83
VPS13C-207ENST00000558919 CADPS2Q86UW7 1296 aa9.86□□□□□ -0.83
VPS13C-207ENST00000558919 NCKAP5LQ9HCH0 1330 aa9.84□□□□□ -0.83
VPS13C-207ENST00000558919 SNPHO15079 494 aa9.83□□□□□ -0.84
VPS13C-207ENST00000558919 LCE2DQ5TA82 110 aaPredicted RBP9.83□□□□□ -0.84
VPS13C-207ENST00000558919 FAM163AQ96GL9 167 aaPredicted RBP9.83□□□□□ -0.84
VPS13C-207ENST00000558919 TSHZ2Q9NRE2 1034 aa9.83□□□□□ -0.84
VPS13C-207ENST00000558919 FOXK1P85037 733 aa9.82□□□□□ -0.84
VPS13C-207ENST00000558919 HAP1P54257 671 aaPredicted RBP9.79□□□□□ -0.84
VPS13C-207ENST00000558919 DSG2Q14126 1118 aa9.79□□□□□ -0.84
VPS13C-207ENST00000558919 MFSD10Q14728 455 aa9.79□□□□□ -0.84
VPS13C-207ENST00000558919 LARP6Q9BRS8 491 aaKnown RBP9.79□□□□□ -0.84
VPS13C-207ENST00000558919 DDX27Q96GQ7 796 aaKnown RBP9.78□□□□□ -0.84
VPS13C-207ENST00000558919 DOK7Q18PE1 504 aa9.77□□□□□ -0.85
VPS13C-207ENST00000558919 PPP1R15BQ5SWA1 713 aa9.77□□□□□ -0.85
VPS13C-207ENST00000558919 PLPP6Q8IY26 295 aa9.77□□□□□ -0.85
VPS13C-207ENST00000558919 HOXB3P14651 431 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-207ENST00000558919 SLC34A2O95436 690 aa9.74□□□□□ -0.85
VPS13C-207ENST00000558919 CDAN1Q8IWY9 1227 aa9.73□□□□□ -0.85
VPS13C-207ENST00000558919 RIMBP2O15034 1052 aa9.72□□□□□ -0.85
VPS13C-207ENST00000558919 ZSWIM6Q9HCJ5 1215 aa9.72□□□□□ -0.85
VPS13C-207ENST00000558919 WDR70Q9NW82 654 aa9.72□□□□□ -0.85
VPS13C-207ENST00000558919 ZNF710Q8N1W2 664 aa9.71□□□□□ -0.86
VPS13C-207ENST00000558919 ST18O60284 1047 aa9.68□□□□□ -0.86
VPS13C-207ENST00000558919 CAMK2BQ13554 666 aa9.68□□□□□ -0.86
VPS13C-207ENST00000558919 PTCD2Q8WV60 388 aaKnown RBP9.68□□□□□ -0.86
VPS13C-207ENST00000558919 VSIG10Q8N0Z9 540 aa9.67□□□□□ -0.86
VPS13C-207ENST00000558919 HOXB1P14653 301 aaPredicted RBP9.66□□□□□ -0.86
VPS13C-207ENST00000558919 GPR153Q6NV75 609 aa9.66□□□□□ -0.86
VPS13C-207ENST00000558919 TBC1D12O60347 775 aa9.65□□□□□ -0.86
VPS13C-207ENST00000558919 E2F4Q16254 413 aa9.65□□□□□ -0.86
VPS13C-207ENST00000558919 OXER1Q8TDS5 423 aa9.65□□□□□ -0.86
VPS13C-207ENST00000558919 PCDHGA4Q9Y5G9 962 aa9.65□□□□□ -0.86
VPS13C-207ENST00000558919 EMILIN3Q9NT22 766 aa9.63□□□□□ -0.87
VPS13C-207ENST00000558919 ARSIQ5FYB1 569 aa9.62□□□□□ -0.87
VPS13C-207ENST00000558919 KDM2AQ9Y2K7 1162 aa9.62□□□□□ -0.87
VPS13C-207ENST00000558919 UPF1Q92900 1129 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS13C-207ENST00000558919 MMRN1Q13201 1228 aa9.6□□□□□ -0.87
VPS13C-207ENST00000558919 MAP3K9P80192 1104 aa9.59□□□□□ -0.87
VPS13C-207ENST00000558919 ARIH1Q9Y4X5 557 aaPredicted RBP9.59□□□□□ -0.87
VPS13C-207ENST00000558919 KDM4FA0A1W2PPD8 638 aa9.57□□□□□ -0.88
VPS13C-207ENST00000558919 NUDT7P0C024 238 aa9.57□□□□□ -0.88
VPS13C-207ENST00000558919 P3H3Q8IVL6 736 aa9.57□□□□□ -0.88
VPS13C-207ENST00000558919 KHSRPQ92945 711 aaKnown RBP eCLIP9.57□□□□□ -0.889e-6■□□□□ 10.6
VPS13C-207ENST00000558919 EMP3P54852 163 aa9.56□□□□□ -0.88
VPS13C-207ENST00000558919 MARVELD3Q96A59 401 aa9.55□□□□□ -0.88
VPS13C-207ENST00000558919 DPYSL4O14531 572 aa9.54□□□□□ -0.88
VPS13C-207ENST00000558919 KCNV2Q8TDN2 545 aa9.54□□□□□ -0.88
VPS13C-207ENST00000558919 ARHGEF1Q92888 912 aaKnown RBP9.54□□□□□ -0.88
VPS13C-207ENST00000558919 ZNF316A6NFI3 1004 aaPredicted RBP9.53□□□□□ -0.88
VPS13C-207ENST00000558919 EVI5O60447 810 aa9.53□□□□□ -0.88
VPS13C-207ENST00000558919 SLC24A1O60721 1099 aa9.53□□□□□ -0.88
VPS13C-207ENST00000558919 ANO8Q9HCE9 1232 aaPredicted RBP9.53□□□□□ -0.88
VPS13C-207ENST00000558919 ERBB3P21860 1342 aa9.52□□□□□ -0.89
VPS13C-207ENST00000558919 SPDYE16A6NNV3 312 aaPredicted RBP9.51□□□□□ -0.89
VPS13C-207ENST00000558919 SPNS2Q8IVW8 549 aa9.51□□□□□ -0.89
VPS13C-207ENST00000558919 LHX6Q9UPM6 363 aa9.51□□□□□ -0.89
VPS13C-207ENST00000558919 FAM205CA6NFA0 338 aa9.5□□□□□ -0.89
VPS13C-207ENST00000558919 PDIA6Q15084 440 aa9.5□□□□□ -0.89
VPS13C-207ENST00000558919 PSDA5PKW4 1024 aaPredicted RBP9.49□□□□□ -0.89
VPS13C-207ENST00000558919 HS3ST6Q96QI5 342 aa9.48□□□□□ -0.89
VPS13C-207ENST00000558919 VARS2Q5ST30 1063 aaKnown RBP9.47□□□□□ -0.89
VPS13C-207ENST00000558919 PTGER2P43116 358 aa9.46□□□□□ -0.9
VPS13C-207ENST00000558919 POTEB3A0JP26 581 aa9.45□□□□□ -0.9
VPS13C-207ENST00000558919 POTEBQ6S5H4 581 aa9.45□□□□□ -0.9
VPS13C-207ENST00000558919 FOSBP53539 338 aa9.43□□□□□ -0.9
VPS13C-207ENST00000558919 ZNF687Q8N1G0 1237 aa9.43□□□□□ -0.9
VPS13C-207ENST00000558919 JPH4Q96JJ6 628 aa9.43□□□□□ -0.9
VPS13C-207ENST00000558919 PHF14O94880 888 aa9.42□□□□□ -0.9
VPS13C-207ENST00000558919 PPP4R3BQ5MIZ7 849 aa9.42□□□□□ -0.9
VPS13C-207ENST00000558919 ZNF454Q8N9F8 522 aa9.41□□□□□ -0.9
VPS13C-207ENST00000558919 EPAS1Q99814 870 aa9.4□□□□□ -0.9
VPS13C-207ENST00000558919 PCDHGA10Q9Y5H3 936 aa9.39□□□□□ -0.91
VPS13C-207ENST00000558919 DDX12PQ92771 950 aa9.38□□□□□ -0.91
VPS13C-207ENST00000558919 FBXW7Q969H0 707 aa9.38□□□□□ -0.91
VPS13C-207ENST00000558919 ZDHHC16Q969W1 377 aa9.38□□□□□ -0.91
VPS13C-207ENST00000558919 TYW1BQ6NUM6 668 aa9.37□□□□□ -0.91
VPS13C-207ENST00000558919 PBX2P40425 430 aa9.36□□□□□ -0.91
VPS13C-207ENST00000558919 BCL2L12Q9HB09 334 aa9.36□□□□□ -0.91
VPS13C-207ENST00000558919 GRXCR2A6NFK2 248 aa9.35□□□□□ -0.91
VPS13C-207ENST00000558919 SEMA3EO15041 775 aa9.35□□□□□ -0.91
VPS13C-207ENST00000558919 NBR1Q14596 966 aa9.34□□□□□ -0.91
VPS13C-207ENST00000558919 TESPA1A2RU30 521 aaPredicted RBP9.33□□□□□ -0.92
VPS13C-207ENST00000558919 ARHGAP33O14559 1287 aa9.33□□□□□ -0.92
VPS13C-207ENST00000558919 MLLT3P42568 568 aaPredicted RBP9.33□□□□□ -0.92
VPS13C-207ENST00000558919 ADAM33Q9BZ11 813 aa9.33□□□□□ -0.92
VPS13C-207ENST00000558919 OSBPP22059 807 aa9.32□□□□□ -0.92
VPS13C-207ENST00000558919 POTEEQ6S8J3 1075 aa9.32□□□□□ -0.92
VPS13C-207ENST00000558919 PTPREP23469 700 aa9.31□□□□□ -0.92
VPS13C-207ENST00000558919 EN1Q05925 392 aaPredicted RBP9.31□□□□□ -0.92
VPS13C-207ENST00000558919 SMYD5Q6GMV2 418 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms