RNA–Protein interactions for RNA: ENST00000558879.5

LRRC28-210, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4 BASIC

Gene LRRC28, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-210ENST00000558879 CDK11AQ9UQ88 783 aaPredicted RBP27.74■■■□□ 2.03
LRRC28-210ENST00000558879 CDC42BPAQ5VT25 1732 aa27.74■■■□□ 2.03
LRRC28-210ENST00000558879 SIGLEC1Q9BZZ2 1709 aa27.71■■■□□ 2.03
LRRC28-210ENST00000558879 POGZQ7Z3K3 1410 aa27.69■■■□□ 2.02
LRRC28-210ENST00000558879 ZFYVE16Q7Z3T8 1539 aa27.68■■■□□ 2.02
LRRC28-210ENST00000558879 ARHGAP5Q13017 1502 aa27.67■■■□□ 2.02
LRRC28-210ENST00000558879 MAGI2Q86UL8 1455 aa27.66■■■□□ 2.02
LRRC28-210ENST00000558879 KDM5CP41229 1560 aa27.65■■■□□ 2.02
LRRC28-210ENST00000558879 ITSN2Q9NZM3 1697 aa27.64■■■□□ 2.02
LRRC28-210ENST00000558879 SCAPERQ9BY12 1400 aa27.64■■■□□ 2.02
LRRC28-210ENST00000558879 MADDQ8WXG6 1647 aa27.63■■■□□ 2.01
LRRC28-210ENST00000558879 CEP162Q5TB80 1403 aa27.61■■■□□ 2.01
LRRC28-210ENST00000558879 ABCC1P33527 1531 aa27.61■■■□□ 2.01
LRRC28-210ENST00000558879 YEATS2Q9ULM3 1422 aa27.6■■■□□ 2.01
LRRC28-210ENST00000558879 ZNF518AQ6AHZ1 1483 aa27.57■■■□□ 2
LRRC28-210ENST00000558879 HECW2Q9P2P5 1572 aa27.57■■■□□ 2
LRRC28-210ENST00000558879 EFCAB2Q5VUJ9 269 aa27.57■■■□□ 2
LRRC28-210ENST00000558879 RIMS1Q86UR5 1692 aaKnown RBP27.56■■■□□ 2
LRRC28-210ENST00000558879 PTPRMP28827 1452 aa27.52■■■□□ 2
LRRC28-210ENST00000558879 FER1L4A9Z1Z3 1794 aa27.52■■■□□ 2
LRRC28-210ENST00000558879 SAMD9LQ8IVG5 1584 aa27.52■■■□□ 2
LRRC28-210ENST00000558879 ABCA6Q8N139 1617 aa27.5■■□□□ 1.99
LRRC28-210ENST00000558879 DIP2CQ9Y2E4 1556 aa27.5■■□□□ 1.99
LRRC28-210ENST00000558879 EHBP1L1Q8N3D4 1523 aa27.5■■□□□ 1.99
LRRC28-210ENST00000558879 ARHGEF12Q9NZN5 1544 aa27.49■■□□□ 1.99
LRRC28-210ENST00000558879 REREQ9P2R6 1566 aa27.48■■□□□ 1.99
LRRC28-210ENST00000558879 KIDINS220Q9ULH0 1771 aa27.46■■□□□ 1.99
LRRC28-210ENST00000558879 C9orf84Q5VXU9 1444 aa27.46■■□□□ 1.99
LRRC28-210ENST00000558879 GPATCH8Q9UKJ3 1502 aaKnown RBP27.46■■□□□ 1.99
LRRC28-210ENST00000558879 ATP10AO60312 1499 aa27.44■■□□□ 1.98
LRRC28-210ENST00000558879 TIAM1Q13009 1591 aa27.44■■□□□ 1.98
LRRC28-210ENST00000558879 MLH3Q9UHC1 1453 aa27.43■■□□□ 1.98
LRRC28-210ENST00000558879 SYCP2Q9BX26 1530 aa27.41■■□□□ 1.98
LRRC28-210ENST00000558879 TRAPPC8Q9Y2L5 1435 aa27.41■■□□□ 1.98
LRRC28-210ENST00000558879 ARID4BQ4LE39 1312 aaPredicted RBP27.41■■□□□ 1.98
LRRC28-210ENST00000558879 MTUS2Q5JR59 1369 aa27.38■■□□□ 1.97
LRRC28-210ENST00000558879 SUPT6HQ7KZ85 1726 aaKnown RBP27.38■■□□□ 1.97
LRRC28-210ENST00000558879 AFAP1Q8N556 730 aa27.36■■□□□ 1.97
LRRC28-210ENST00000558879 INO80Q9ULG1 1556 aaPredicted RBP27.35■■□□□ 1.97
LRRC28-210ENST00000558879 VPS8Q8N3P4 1428 aa27.33■■□□□ 1.97
LRRC28-210ENST00000558879 PLEKHH2Q8IVE3 1493 aa27.32■■□□□ 1.96
LRRC28-210ENST00000558879 AGLP35573 1532 aa27.31■■□□□ 1.96
LRRC28-210ENST00000558879 CCNB3Q8WWL7 1395 aa27.31■■□□□ 1.96
LRRC28-210ENST00000558879 KIAA1107Q9UPP5 1409 aa27.3■■□□□ 1.96
LRRC28-210ENST00000558879 LOC105371045A0A1W2PR82 267 aa27.29■■□□□ 1.96
LRRC28-210ENST00000558879 ATP7AQ04656 1500 aa27.27■■□□□ 1.96
LRRC28-210ENST00000558879 LMTK3Q96Q04 1460 aa27.26■■□□□ 1.95
LRRC28-210ENST00000558879 PLXNC1O60486 1568 aa27.24■■□□□ 1.95
LRRC28-210ENST00000558879 NCOA2Q15596 1464 aa27.24■■□□□ 1.95
LRRC28-210ENST00000558879 MAP3K1Q13233 1512 aa27.23■■□□□ 1.95
LRRC28-210ENST00000558879 ADGBQ8N7X0 1667 aa27.23■■□□□ 1.95
LRRC28-210ENST00000558879 PREX1Q8TCU6 1659 aa27.22■■□□□ 1.95
LRRC28-210ENST00000558879 C3P01024 1663 aa27.21■■□□□ 1.95
LRRC28-210ENST00000558879 CFDP1Q9UEE9 299 aaPredicted RBP27.21■■□□□ 1.95
LRRC28-210ENST00000558879 ZNF777Q9ULD5 760 aaPredicted RBP27.2■■□□□ 1.94
LRRC28-210ENST00000558879 LRRC9Q6ZRR7 1453 aa27.19■■□□□ 1.94
LRRC28-210ENST00000558879 MBD5Q9P267 1494 aa27.19■■□□□ 1.94
LRRC28-210ENST00000558879 MLECQ14165 292 aa27.18■■□□□ 1.94
LRRC28-210ENST00000558879 MROH2AA6NES4 1674 aa27.17■■□□□ 1.94
LRRC28-210ENST00000558879 CAMSAP2Q08AD1 1489 aa27.15■■□□□ 1.94
LRRC28-210ENST00000558879 MYT1LQ9UL68 1186 aa27.15■■□□□ 1.94
LRRC28-210ENST00000558879 HNRNPMP52272 730 aaKnown RBP eCLIP27.14■■□□□ 1.94
LRRC28-210ENST00000558879 SETD1BQ9UPS6 1966 aaKnown RBP27.14■■□□□ 1.94
LRRC28-210ENST00000558879 SPAG9O60271 1321 aaKnown RBP27.13■■□□□ 1.93
LRRC28-210ENST00000558879 ARHGEF5Q12774 1597 aa27.11■■□□□ 1.93
LRRC28-210ENST00000558879 ZNF644Q9H582 1327 aaPredicted RBP27.09■■□□□ 1.93
LRRC28-210ENST00000558879 A2MP01023 1474 aa27.08■■□□□ 1.93
LRRC28-210ENST00000558879 CCDC141Q6ZP82 1450 aa27.07■■□□□ 1.92
LRRC28-210ENST00000558879 RTEL1-TNFRSF6BF6WH68 1400 aa27.06■■□□□ 1.92
LRRC28-210ENST00000558879 CLTCQ00610 1675 aaKnown RBP27.05■■□□□ 1.92
LRRC28-210ENST00000558879 CNTLNQ9NXG0 1405 aa27.03■■□□□ 1.92
LRRC28-210ENST00000558879 MAST1Q9Y2H9 1570 aa27■■□□□ 1.91
LRRC28-210ENST00000558879 PLPPR3Q6T4P5 718 aa26.99■■□□□ 1.91
LRRC28-210ENST00000558879 CROCC2H7BZ55 1655 aa26.97■■□□□ 1.91
LRRC28-210ENST00000558879 MYOM3Q5VTT5 1437 aa26.97■■□□□ 1.91
LRRC28-210ENST00000558879 CEBPAP49715 358 aaPredicted RBP26.96■■□□□ 1.91
LRRC28-210ENST00000558879 KANK4Q5T7N3 995 aaPredicted RBP26.96■■□□□ 1.91
LRRC28-210ENST00000558879 STRCQ7RTU9 1775 aa26.96■■□□□ 1.91
LRRC28-210ENST00000558879 MIA2Q96PC5 1412 aa26.95■■□□□ 1.9
LRRC28-210ENST00000558879 UHRF1BP1Q6BDS2 1440 aa26.93■■□□□ 1.9
LRRC28-210ENST00000558879 ZNF142P52746 1687 aaPredicted RBP26.92■■□□□ 1.9
LRRC28-210ENST00000558879 FAM135AQ9P2D6 1515 aa26.91■■□□□ 1.9
LRRC28-210ENST00000558879 HSPA2P54652 639 aa26.91■■□□□ 1.9
LRRC28-210ENST00000558879 RSPH4AQ5TD94 716 aa26.9■■□□□ 1.9
LRRC28-210ENST00000558879 MYO3AQ8NEV4 1616 aa26.9■■□□□ 1.9
LRRC28-210ENST00000558879 DHX29Q7Z478 1369 aaKnown RBP26.89■■□□□ 1.9
LRRC28-210ENST00000558879 PTPN23Q9H3S7 1636 aa26.89■■□□□ 1.9
LRRC28-210ENST00000558879 NPATQ14207 1427 aa26.88■■□□□ 1.89
LRRC28-210ENST00000558879 RNF17Q9BXT8 1623 aaKnown RBP26.87■■□□□ 1.89
LRRC28-210ENST00000558879 EIF2AK4Q9P2K8 1649 aaKnown RBP26.87■■□□□ 1.89
LRRC28-210ENST00000558879 ESF1Q9H501 851 aaKnown RBP26.87■■□□□ 1.89
LRRC28-210ENST00000558879 ZMYM3Q14202 1370 aa26.84■■□□□ 1.89
LRRC28-210ENST00000558879 KDM5DQ9BY66 1539 aa26.83■■□□□ 1.89
LRRC28-210ENST00000558879 DNMT1P26358 1616 aaKnown RBP26.82■■□□□ 1.88
LRRC28-210ENST00000558879 ZC3H13Q5T200 1668 aaKnown RBP26.82■■□□□ 1.88
LRRC28-210ENST00000558879 TCOF1Q13428 1488 aaKnown RBP26.8■■□□□ 1.88
LRRC28-210ENST00000558879 SHANK2Q9UPX8 1470 aa26.8■■□□□ 1.88
LRRC28-210ENST00000558879 PTPRKQ15262 1439 aa26.79■■□□□ 1.88
LRRC28-210ENST00000558879 PPP6R1Q9UPN7 881 aa26.78■■□□□ 1.88
LRRC28-210ENST00000558879 MROH1Q8NDA8 1641 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms