RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TSHZ2Q9NRE2 1034 aa6.71□□□□□ -1.34
TRAV28-201ENST00000557548 LOC100996750A0A140TA64 210 aa6.7□□□□□ -1.34
TRAV28-201ENST00000557548 KRTAP4-6Q9BYQ5 205 aa6.7□□□□□ -1.34
TRAV28-201ENST00000557548 CIZ1Q9ULV3 898 aaPredicted RBP6.7□□□□□ -1.34
TRAV28-201ENST00000557548 CHGAP10645 457 aaKnown RBP6.69□□□□□ -1.34
TRAV28-201ENST00000557548 MKRN3Q13064 507 aaKnown RBP6.69□□□□□ -1.34
TRAV28-201ENST00000557548 IFFO2Q5TF58 517 aa6.69□□□□□ -1.34
TRAV28-201ENST00000557548 GOLGA2Q08379 1002 aa6.67□□□□□ -1.34
TRAV28-201ENST00000557548 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.67□□□□□ -1.34
TRAV28-201ENST00000557548 G3V3G9 751 aa6.66□□□□□ -1.34
TRAV28-201ENST00000557548 DCAF8Q5TAQ9 597 aa6.66□□□□□ -1.34
TRAV28-201ENST00000557548 A0A0G2JS52 829 aa6.64□□□□□ -1.35
TRAV28-201ENST00000557548 PBX2P40425 430 aa6.64□□□□□ -1.35
TRAV28-201ENST00000557548 GPR153Q6NV75 609 aa6.64□□□□□ -1.35
TRAV28-201ENST00000557548 ZBTB47Q9UFB7 747 aaPredicted RBP6.63□□□□□ -1.35
TRAV28-201ENST00000557548 BOLA1Q9Y3E2 137 aa6.61□□□□□ -1.35
TRAV28-201ENST00000557548 HS6ST3Q8IZP7 471 aa6.6□□□□□ -1.35
TRAV28-201ENST00000557548 NBR1Q14596 966 aa6.59□□□□□ -1.35
TRAV28-201ENST00000557548 TRAF7Q6Q0C0 670 aa6.59□□□□□ -1.35
TRAV28-201ENST00000557548 TRIM41Q8WV44 630 aa6.59□□□□□ -1.35
TRAV28-201ENST00000557548 FAM212AQ96EL1 285 aa6.59□□□□□ -1.35
TRAV28-201ENST00000557548 DNAJC5Q9H3Z4 198 aa6.59□□□□□ -1.35
TRAV28-201ENST00000557548 ZNF316A6NFI3 1004 aaPredicted RBP6.58□□□□□ -1.36
TRAV28-201ENST00000557548 LAPTM4AQ15012 233 aa6.58□□□□□ -1.36
TRAV28-201ENST00000557548 ILDR1Q86SU0 546 aaPredicted RBP6.58□□□□□ -1.36
TRAV28-201ENST00000557548 RNF25Q96BH1 459 aaPredicted RBP6.58□□□□□ -1.36
TRAV28-201ENST00000557548 NUBP1P53384 320 aa6.57□□□□□ -1.36
TRAV28-201ENST00000557548 DPY19L2Q6NUT2 758 aa6.56□□□□□ -1.36
TRAV28-201ENST00000557548 LCE2BO14633 110 aa6.55□□□□□ -1.36
TRAV28-201ENST00000557548 PCDHB8Q9UN66 801 aa6.55□□□□□ -1.36
TRAV28-201ENST00000557548 GSE1Q14687 1217 aa6.54□□□□□ -1.36
TRAV28-201ENST00000557548 ADGRD1Q6QNK2 874 aa6.54□□□□□ -1.36
TRAV28-201ENST00000557548 NKX1-1Q15270 411 aaPredicted RBP6.52□□□□□ -1.37
TRAV28-201ENST00000557548 ZNF775Q96BV0 537 aaPredicted RBP6.52□□□□□ -1.37
TRAV28-201ENST00000557548 KCTD12Q96CX2 325 aaKnown RBP6.52□□□□□ -1.37
TRAV28-201ENST00000557548 RIOK3O14730 519 aaKnown RBP6.51□□□□□ -1.37
TRAV28-201ENST00000557548 ARSIQ5FYB1 569 aa6.51□□□□□ -1.37
TRAV28-201ENST00000557548 ZNF787Q6DD87 383 aa6.5□□□□□ -1.37
TRAV28-201ENST00000557548 POTEEQ6S8J3 1075 aa6.5□□□□□ -1.37
TRAV28-201ENST00000557548 GTPBP6O43824 516 aaPredicted RBP6.49□□□□□ -1.37
TRAV28-201ENST00000557548 AXIN2Q9Y2T1 843 aa6.49□□□□□ -1.37
TRAV28-201ENST00000557548 STK25O00506 426 aa6.48□□□□□ -1.37
TRAV28-201ENST00000557548 PYGBP11216 843 aa6.48□□□□□ -1.37
TRAV28-201ENST00000557548 TK2O00142 265 aa6.45□□□□□ -1.38
TRAV28-201ENST00000557548 VGFO15240 615 aaPredicted RBP6.45□□□□□ -1.38
TRAV28-201ENST00000557548 HRO43593 1189 aa6.44□□□□□ -1.38
TRAV28-201ENST00000557548 PTPN5P54829 565 aa6.43□□□□□ -1.38
TRAV28-201ENST00000557548 ZNF467Q7Z7K2 595 aaPredicted RBP6.42□□□□□ -1.38
TRAV28-201ENST00000557548 STAC3Q96MF2 364 aa6.42□□□□□ -1.38
TRAV28-201ENST00000557548 ARHGAP33O14559 1287 aa6.41□□□□□ -1.38
TRAV28-201ENST00000557548 GFRA3O60609 400 aa6.41□□□□□ -1.38
TRAV28-201ENST00000557548 KHSRPQ92945 711 aaKnown RBP eCLIP6.41□□□□□ -1.38
TRAV28-201ENST00000557548 BCL11BQ9C0K0 894 aaPredicted RBP6.41□□□□□ -1.38
TRAV28-201ENST00000557548 TIMELESSQ9UNS1 1208 aa6.41□□□□□ -1.38
TRAV28-201ENST00000557548 STK24Q9Y6E0 443 aa6.41□□□□□ -1.38
TRAV28-201ENST00000557548 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.4□□□□□ -1.38
TRAV28-201ENST00000557548 TULP1O00294 542 aaPredicted RBP6.4□□□□□ -1.38
TRAV28-201ENST00000557548 ZFP91Q96JP5 570 aaPredicted RBP6.4□□□□□ -1.38
TRAV28-201ENST00000557548 CHRM1P11229 460 aaPredicted RBP6.39□□□□□ -1.39
TRAV28-201ENST00000557548 TMEM92Q6UXU6 159 aa6.38□□□□□ -1.39
TRAV28-201ENST00000557548 PSEN1P49768 467 aa6.37□□□□□ -1.39
TRAV28-201ENST00000557548 RYDENQ9NUL5 291 aaKnown RBP6.37□□□□□ -1.39
TRAV28-201ENST00000557548 GTF3C3Q9Y5Q9 886 aa6.37□□□□□ -1.39
TRAV28-201ENST00000557548 P3H3Q8IVL6 736 aa6.34□□□□□ -1.39
TRAV28-201ENST00000557548 LHX6Q9UPM6 363 aa6.33□□□□□ -1.4
TRAV28-201ENST00000557548 NRG2O14511 850 aaPredicted RBP6.32□□□□□ -1.4
TRAV28-201ENST00000557548 STK17AQ9UEE5 414 aa6.32□□□□□ -1.4
TRAV28-201ENST00000557548 NUDT7P0C024 238 aa6.31□□□□□ -1.4
TRAV28-201ENST00000557548 CADPS2Q86UW7 1296 aa6.31□□□□□ -1.4
TRAV28-201ENST00000557548 KCNV2Q8TDN2 545 aa6.31□□□□□ -1.4
TRAV28-201ENST00000557548 TMEM132AQ24JP5 1023 aa6.3□□□□□ -1.4
TRAV28-201ENST00000557548 MICALL2Q8IY33 904 aa6.29□□□□□ -1.4
TRAV28-201ENST00000557548 WDR70Q9NW82 654 aa6.29□□□□□ -1.4
TRAV28-201ENST00000557548 DMRTA1Q5VZB9 504 aa6.28□□□□□ -1.4
TRAV28-201ENST00000557548 LMOD2Q6P5Q4 547 aa6.28□□□□□ -1.4
TRAV28-201ENST00000557548 THSD4Q6ZMP0 1018 aa6.28□□□□□ -1.4
TRAV28-201ENST00000557548 CABP2Q9NPB3 220 aa6.28□□□□□ -1.4
TRAV28-201ENST00000557548 PSDA5PKW4 1024 aaPredicted RBP6.27□□□□□ -1.41
TRAV28-201ENST00000557548 ITGBL1O95965 494 aaPredicted RBP6.27□□□□□ -1.41
TRAV28-201ENST00000557548 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.26□□□□□ -1.41
TRAV28-201ENST00000557548 TREML4Q6UXN2 200 aa6.25□□□□□ -1.41
TRAV28-201ENST00000557548 ERICH6Q7L0X2 663 aa6.25□□□□□ -1.41
TRAV28-201ENST00000557548 PDAP1Q13442 181 aaKnown RBP6.24□□□□□ -1.41
TRAV28-201ENST00000557548 SUZ12Q15022 739 aaKnown RBP6.24□□□□□ -1.41
TRAV28-201ENST00000557548 PSEN2P49810 448 aa6.23□□□□□ -1.41
TRAV28-201ENST00000557548 LCE2AQ5TA79 106 aaPredicted RBP6.23□□□□□ -1.41
TRAV28-201ENST00000557548 C14orf37Q86TY3 774 aa6.22□□□□□ -1.41
TRAV28-201ENST00000557548 MFRPQ9BY79 579 aa6.22□□□□□ -1.41
TRAV28-201ENST00000557548 BRPF1P55201 1214 aaPredicted RBP6.2□□□□□ -1.42
TRAV28-201ENST00000557548 ARXQ96QS3 562 aa6.19□□□□□ -1.42
TRAV28-201ENST00000557548 PPP1R37O75864 691 aa6.18□□□□□ -1.42
TRAV28-201ENST00000557548 ARHGEF1Q92888 912 aaKnown RBP6.18□□□□□ -1.42
TRAV28-201ENST00000557548 ZC3H15Q8WU90 426 aaKnown RBP6.17□□□□□ -1.42
TRAV28-201ENST00000557548 WNT2BQ93097 391 aa6.17□□□□□ -1.42
TRAV28-201ENST00000557548 GOLGA8CPA6NN73 597 aa6.16□□□□□ -1.42
TRAV28-201ENST00000557548 E2F4Q16254 413 aa6.16□□□□□ -1.42
TRAV28-201ENST00000557548 PCDHGA4Q9Y5G9 962 aa6.16□□□□□ -1.42
TRAV28-201ENST00000557548 SEMA3EO15041 775 aa6.15□□□□□ -1.42
TRAV28-201ENST00000557548 INSM1Q01101 510 aaPredicted RBP6.15□□□□□ -1.42
TRAV28-201ENST00000557548 NEUROD2Q15784 382 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms